Browse Element(s) Details


OsAffx.20098.1.S1_at

Description tigr:9640.m04246
TID=OsAffx.20098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4315010/11hypothetical protein
LOC_Os03g365001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43120OsAffx.32165.1.S1_at11/1112+26737618..26745501expressed protein
LOC_Os12g43130Os.10025.1.S1_a_at11/1112+26746887..26749996Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os12g43140OsAffx.7876.1.S1_s_at11/1112+26759727..26760347expressed protein
LOC_Os12g43150OsAffx.20098.1.S1_at10/1112+26760625..26764744hypothetical protein
LOC_Os12g43150Os.54175.1.S1_at1/1112+26760625..26764744hypothetical protein
LOC_Os12g43160NANA12+26767810..26769148hypothetical protein
LOC_Os12g43179OsAffx.22385.1.S1_x_at4/1112+26778901..26784854retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43179OsAffx.20329.1.S1_at2/1112+26778901..26784854retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43200NANA12+26787221..26787580hypothetical protein
LOC_Os12g43220NANA12+26788128..26795471hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20098.1.S1_at--334--2053Chr06:1693510..1693531 (22 bp)
ACTTTTCTCCTCAGTTGGGCAGCAC
NONE
OsAffx.20098.1.S1_at--1138--4371Chr12:26764354..26764378 (25 bp)
CCAACCGGCGATCGAGACCAGCAGA
LOC_Os12g43150
OsAffx.20098.1.S1_at--83--3991NONE
CGGGCGAAGGCGATGCTATTTGTAT
NONE
OsAffx.20098.1.S1_at--310--211Chr12:26760782..26760806 (25 bp)
ATTTGAGCAGGATTGTCCACCCACC
LOC_Os12g43150
OsAffx.20098.1.S1_at--834--8691Chr12:26760769..26760793 (25 bp)
TGTCCACCCACCATCTGGAAATCAT
LOC_Os12g43150
OsAffx.20098.1.S1_at--139--9651Chr12:26760745..26760769 (25 bp)
TCAGGGTGCTGATTGCGCCAAAATT
LOC_Os12g43150
OsAffx.20098.1.S1_at--472--10711Chr12:26760733..26760757 (25 bp)
TTGCGCCAAAATTGAAGGCCTATTG
LOC_Os12g43150
OsAffx.20098.1.S1_at--270--5711Chr12:26760706..26760730 (25 bp)
GACTACTACATGTGTGAACCTCCAA
LOC_Os12g43150
OsAffx.20098.1.S1_at--129--8991Chr12:26760692..26760716 (25 bp)
TGAACCTCCAAGAACACTTCATCGT
LOC_Os12g43150
OsAffx.20098.1.S1_at--507--511Chr12:26760672..26760696 (25 bp)
ATCGTCGTCCTGTCGTTGACACCTT
LOC_Os12g43150
OsAffx.20098.1.S1_at--1148--6651Chr12:26760658..26760682 (25 bp)
GTTGACACCTTCATGCGACTTTAAT
LOC_Os12g43150
Target Sequence 
ACTTTTCTCCTCAGTTGGGCAGCACAGCCGGCGGTGGGGGAGGCGGGAGTCCGGCGGTGGCGGTGACGAGGCGGCAGCGG
CGGGCGATGAGGCGACGACGCTGGAGAAGGGAGACGCCTGCATCCGCCGCCTCGCCTTCGCCTCCCAGCCCCGTGGGTCT
CCTCGACTCCTCTGCCTGCCGAATCCACCAACCGTGGCCTCTCTGAGCTCGTCGGCCGCCTGCACCGCAGCGGGGTTCCT
TCCCAAGAACCTCCTCTCCATCCGCTCCCTCACCATGGTCTCCCGCCGACAACGACGACACCTCCCAACCGGCGATCGAG
ACCAGCAGAGGCACGGGCGAAGGCGATGCTATTTGTATGAGCCTGATTTGAGCAGGATTGTCCACCCACCATCTGGAAAT
CATCAGGGTGCTGATTGCGCCAAAATTGAAGGCCTATTGGGGACTACTACATGTGTGAACCTCCAAGAACACTTCATCGT
CGTCCTGTCGTTGACACCTTCATGCGACTTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis