Browse Element(s) Details


OsAffx.7876.1.S1_s_at

Description tigr:9640.m04245
TID=OsAffx.7876.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4314011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43110Os.55333.1.S1_at10/1112+26734618..26735291Auxin responsive protein, expressed
LOC_Os12g43120OsAffx.32165.1.S1_at11/1112+26737618..26745501expressed protein
LOC_Os12g43130Os.10025.1.S1_a_at11/1112+26746887..26749996Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os12g43140OsAffx.7876.1.S1_s_at11/1112+26759727..26760347expressed protein
LOC_Os12g43150OsAffx.20098.1.S1_at10/1112+26760625..26764744hypothetical protein
LOC_Os12g43150Os.54175.1.S1_at1/1112+26760625..26764744hypothetical protein
LOC_Os12g43160NANA12+26767810..26769148hypothetical protein
LOC_Os12g43179OsAffx.22385.1.S1_x_at4/1112+26778901..26784854retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43179OsAffx.20329.1.S1_at2/1112+26778901..26784854retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006873biological_processcell ion homeostasis
GO:0007275biological_processdevelopment
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0010226biological_processresponse to lithium ion
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7876.1.S1_s_at--446--8831Chr12:26760193..26760217 (25 bp)
TGCGTAGTACGCATACTTTTCAAGT
LOC_Os12g43140
OsAffx.7876.1.S1_s_at--150--2051Chr12:26760207..26760231 (25 bp)
ACTTTTCAAGTTTTCATCAGCTGTA
LOC_Os12g43140
OsAffx.7876.1.S1_s_at--88--9732Chr12:26760212..26760236 (25 bp)
TCAAGTTTTCATCAGCTGTATTATT
LOC_Os12g43140
OsAffx.7876.1.S1_s_at--986--391Chr12:26760222..26760246 (25 bp)
ATCAGCTGTATTATTGTACGCTTTG
LOC_Os12g43140
OsAffx.7876.1.S1_s_at--525--6991Chr12:26760237..26760261 (25 bp)
GTACGCTTTGTGTTGGTGTATCGCT
LOC_Os12g43140
OsAffx.7876.1.S1_s_at--36--1851Chr12:26760239..26760263 (25 bp)
ACGCTTTGTGTTGGTGTATCGCTCT
LOC_Os12g43140
OsAffx.7876.1.S1_s_at--819--10851Chr12:26760249..26760273 (25 bp)
TTGGTGTATCGCTCTTGTTATTTCT
LOC_Os12g43140
OsAffx.7876.1.S1_s_at--681--7431Chr12:26760252..26760276 (25 bp)
GTGTATCGCTCTTGTTATTTCTCTA
LOC_Os12g43140
OsAffx.7876.1.S1_s_at--451--10151Chr12:26760255..26760279 (25 bp)
TATCGCTCTTGTTATTTCTCTATTT
LOC_Os12g43140
OsAffx.7876.1.S1_s_at--77--6931Chr12:26760286..26760310 (25 bp)
GTAGTACTGTCGAGTATGAACCAGC
LOC_Os12g43140
OsAffx.7876.1.S1_s_at--775--8711Chr12:26760293..26760317 (25 bp)
TGTCGAGTATGAACCAGCAAAAAAT
LOC_Os12g43140
Target Sequence 
TGCGTAGTACGCATACTTTTCAAGTTTTCATCAGCTGTATTATTGTACGCTTTGTGTTGGTGTATCGCTCTTGTTATTTC
TCTATTTCTCTATGTAGTACTGTCGAGTATGAACCAGCAAAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7876.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis