Browse Element(s) Details


Os.13392.1.S1_at

Description gb:AK122030.1
DB_XREF= gi:37991676
TID=Os.13392.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13392 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033112F15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112F15, full insert sequence.
FL= gb:AK122030.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3656011/11Peroxidase 27 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36530Os.56169.1.S1_at11/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed
LOC_Os03g36530Os.51655.2.S1_x_at1/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed
LOC_Os03g36534Os.51372.1.S1_at11/113+20199243..20199812expressed protein
LOC_Os03g36540Os.22677.2.S1_at11/113+20202305..20204631Magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed
LOC_Os03g36550Os.23305.1.A1_x_at5/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36550Os.23305.1.A1_at4/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36550OsAffx.524.1.S1_at1/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36560Os.13392.1.S1_at11/113+20218755..20224247Peroxidase 27 precursor, putative, expressed
LOC_Os03g36560OsAffx.25249.1.S1_at2/113+20218755..20224247Peroxidase 27 precursor, putative, expressed
LOC_Os03g36570OsAffx.5954.3.S1_x_at4/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36570OsAffx.18275.1.S1_x_at1/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36570OsAffx.5954.1.S1_x_at1/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36570OsAffx.22699.1.S1_x_at1/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36580Os.31845.1.S1_x_at3/113+20239030..20241832hypothetical protein
LOC_Os03g36580Os.31845.1.S1_at3/113+20239030..20241832hypothetical protein
LOC_Os03g36580OsAffx.3761.1.S1_x_at1/113+20239030..20241832hypothetical protein
LOC_Os03g36590OsAffx.5954.1.S1_x_at1/113+20243420..20245149retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36600Os.47130.4.A1_x_at3/113+20245288..20251103retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36600OsAffx.5954.5.S1_x_at2/113+20245288..20251103retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36600Os.27455.2.S1_at1/113+20245288..20251103retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36600OsAffx.30294.1.S1_at1/113+20245288..20251103retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13392.1.S1_at--228--5411Chr03:20223656..20223680 (25 bp)
GAAGCGTCTGCGCAACTTCACGGCG
LOC_Os03g36560
Os.13392.1.S1_at--100--5331Chr03:20223833..20223857 (25 bp)
GAAGGGCATGTTCCACTCCGACGAG
LOC_Os03g36560
Os.13392.1.S1_at--636--4771Chr03:20223860..20223884 (25 bp)
GCTGCTCCGGAACGACGTTACCAGG
LOC_Os03g36560
Os.13392.1.S1_at--48--10671Chr03:20223921..20223945 (25 bp)
TTCCTCCGGGACTTTGGCGTGTCAA
LOC_Os03g36560
Os.13392.1.S1_at--486--5691Chr03:20223930..20223954 (25 bp)
GACTTTGGCGTGTCAATGGTGAACA
LOC_Os03g36560
Os.13392.1.S1_at--575--951Chr03:20223999..20224023 (25 bp)
AGGACATGCGCCCTTGTCAACTAGC
LOC_Os03g36560
Os.13392.1.S1_at--866--8731Chr03:20224013..20224037 (25 bp)
TGTCAACTAGCAAAAGCTGCTCCAT
LOC_Os03g36560
Os.13392.1.S1_at--569--9471Chr03:20224065..20224089 (25 bp)
TCTGTGTACCTGATCACCTAGAGAC
LOC_Os03g36560
Os.13392.1.S1_at--220--6991Chr03:20224070..20224094 (25 bp)
GTACCTGATCACCTAGAGACTAATA
LOC_Os03g36560
Os.13392.1.S1_at--981--5691Chr03:20224087..20224111 (25 bp)
GACTAATAGGAGTGTCGTCTGGATT
LOC_Os03g36560
Os.13392.1.S1_at--549--7591Chr03:20224213..20224237 (25 bp)
GGGCATCATTCTATTTTAGTTTAAA
LOC_Os03g36560
Target Sequence 
GAAGCGTCTGCGCAACTTCACGGCGCACCACAACACGGACCCGACCCTGGANGCGACGTANCGCCGCGGGGCTGCGGCGG
CAGTGCAGGTCGGCCAAGGACAACACCACCCAGCTGGAGATGGTGCCCGGCAGCTCGACCACCTTCGACGCCACCTACTA
CGGCCTCGTCGCCGAGCGGAAGGGCATGTTCCACTCCGACGAGGCGCTGCTCCGGAACGACGTTACCAGGGGGCTCGTCT
ACGAGTACATGAGATCGGAGGAGAGCTTCCTCCGGGACTTTGGCGTGTCAATGGTGAACATGGGCAGGGTGGGCGTGCTC
ACCGGCAGCCAGGGGGAGATCCGGAGGACATGCGCCCTTGTCAACTAGCAAAAGCTGCTCCATGCTNGATTTGGTGCCCT
TCGCCGATATNTCTGTGTACCTGATCACCTAGAGACTAATAGGAGTGTCGTCTGGATTAATTAGGGATTATATTATGNCC
AAGTCTGAAATNTATGTGAAACAAATTATTGNCGTTGAAACNTTTGCTAGAATTGTAAGAAAAAAAATACGCAATGACGG
GGCATCATTCTATTTTAGTTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis