Browse Element(s) Details


Os.22677.2.S1_at

Description gb:AK070720.1
DB_XREF= gi:32980744
TID=Os.22677.2
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22677 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative myosin heavy chain (OSJNBa0050M22.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056M13, full insert sequence.
FL= gb:AK060389.1 gb:AK104435.1 gb:AK070720.1 gb:AK071134.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3654011/11Magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36530Os.56169.1.S1_at11/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed
LOC_Os03g36530Os.51655.2.S1_x_at1/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed
LOC_Os03g36534Os.51372.1.S1_at11/113+20199243..20199812expressed protein
LOC_Os03g36540Os.22677.2.S1_at11/113+20202305..20204631Magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed
LOC_Os03g36550Os.23305.1.A1_x_at5/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36550Os.23305.1.A1_at4/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36550OsAffx.524.1.S1_at1/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36560Os.13392.1.S1_at11/113+20218755..20224247Peroxidase 27 precursor, putative, expressed
LOC_Os03g36560OsAffx.25249.1.S1_at2/113+20218755..20224247Peroxidase 27 precursor, putative, expressed
LOC_Os03g36570OsAffx.5954.3.S1_x_at4/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36570OsAffx.18275.1.S1_x_at1/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36570OsAffx.5954.1.S1_x_at1/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36570OsAffx.22699.1.S1_x_at1/113+20228979..20238746retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015995biological_processchlorophyll biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0010007cellular_componentmagnesium chelatase complex
GO:0016851molecular_functionmagnesium chelatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22677.2.S1_at--1154--5491Chr03:20202815..20202839 (25 bp)
GAACAATCTTTGAACTAGTGTCCAG
LOC_Os03g36540
Os.22677.2.S1_at--197--7471Chr03:20202798..20202822 (25 bp)
GTGTCCAGAGATAATGTCATGCCAT
LOC_Os03g36540
Os.22677.2.S1_at--172--7131Chr03:20202783..20202807 (25 bp)
GTCATGCCATAAATATTCTGCTGCT
LOC_Os03g36540
Os.22677.2.S1_at--358--4771Chr03:20202764..20202788 (25 bp)
GCTGCTTTTGTCATTTCTCCTAGAT
LOC_Os03g36540
Os.22677.2.S1_at--719--7951Chr03:20202695..20202719 (25 bp)
GGATCTTTTGCCCAAGTAAGCTTCA
LOC_Os03g36540
Os.22677.2.S1_at--559--7611Chr03:20202645..20202669 (25 bp)
GGGAATTACATTCTGTGCTACTAGA
LOC_Os03g36540
Os.22677.2.S1_at--103--431Chr03:20202613..20202637 (25 bp)
ATCATCATTTTTACTCACTGTTTCA
LOC_Os03g36540
Os.22677.2.S1_at--344--8751Chr03:20202579..20202603 (25 bp)
TGTACAATGGAGGTCCTGGACTCAC
LOC_Os03g36540
Os.22677.2.S1_at--792--3891Chr03:20202564..20202588 (25 bp)
CTGGACTCACTTGTCATTGGGTCAA
LOC_Os03g36540
Os.22677.2.S1_at--394--5271Chr03:20202495..20202519 (25 bp)
GAATGCCCAGGTGTTGTGATTGAAT
LOC_Os03g36540
Os.22677.2.S1_at--590--2311Chr03:20202372..20202396 (25 bp)
AAAGGGTGCATCAGTCCATGGGAGC
LOC_Os03g36540
Target Sequence 
GAACAATCTTTGAACTAGTGTCCAGAGATAATGTCATGCCATAAATATTCTGCTGCTTTTGTCATTTCTCCTAGATGAAA
GGTCCTAAAAATAGAAAATACAATGCTAGAAATCTTGAATGGATCTTTTGCCCAAGTAAGCTTCAATAGTAATTATCTGT
TGGTATTTTAGGGAATTACATTCTGTGCTACTAGAAGTTTTCATCATCATTTTTACTCACTGTTTCAATGAAACAATGTA
CAATGGAGGTCCTGGACTCACTTGTCATTGGGTCAATGAGGAGTTTTGCAATTTCTTAGTGGCATATAATAAGAATAGCT
GAATGCCCAGGTGTTGTGATTGAATAGAAAAATGAATTGAATGTCACTTTAACTATGTGCTTACATGTTTTTAATATTGG
TAAAACATTAAACACGTCTTGTGCAAACATAAGGGTATAAGATAAAGGGTGCATCAGTCCATGGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22677.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis