Browse Element(s) Details


OsAffx.25249.1.S1_at

Description tigr:9631.m02684
TID=OsAffx.25249.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g365602/11Peroxidase 27 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36530Os.56169.1.S1_at11/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed
LOC_Os03g36530Os.51655.2.S1_x_at1/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed
LOC_Os03g36534Os.51372.1.S1_at11/113+20199243..20199812expressed protein
LOC_Os03g36540Os.22677.2.S1_at11/113+20202305..20204631Magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed
LOC_Os03g36550Os.23305.1.A1_x_at5/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36550Os.23305.1.A1_at4/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36550OsAffx.524.1.S1_at1/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36560Os.13392.1.S1_at11/113+20218755..20224247Peroxidase 27 precursor, putative, expressed
LOC_Os03g36560OsAffx.25249.1.S1_at2/113+20218755..20224247Peroxidase 27 precursor, putative, expressed
LOC_Os03g36570OsAffx.5954.3.S1_x_at4/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36570OsAffx.18275.1.S1_x_at1/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36570OsAffx.5954.1.S1_x_at1/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36570OsAffx.22699.1.S1_x_at1/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36580Os.31845.1.S1_x_at3/113+20239030..20241832hypothetical protein
LOC_Os03g36580Os.31845.1.S1_at3/113+20239030..20241832hypothetical protein
LOC_Os03g36580OsAffx.3761.1.S1_x_at1/113+20239030..20241832hypothetical protein
LOC_Os03g36590OsAffx.5954.1.S1_x_at1/113+20243420..20245149retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36600Os.47130.4.A1_x_at3/113+20245288..20251103retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36600OsAffx.5954.5.S1_x_at2/113+20245288..20251103retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36600Os.27455.2.S1_at1/113+20245288..20251103retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36600OsAffx.30294.1.S1_at1/113+20245288..20251103retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25249.1.S1_at--121--371Chr03:15572734..15572758 (25 bp)
ATCAAGGAAGTGGTAGAAGGCGAAC
NONE
OsAffx.25249.1.S1_at--629--4591Chr03:15572715..15572739 (25 bp)
GCGAACTGTGGCCTGTGGCGGGAAA
NONE
OsAffx.25249.1.S1_at--769--4271Chr03:15572704..15572728 (25 bp)
CCTGTGGCGGGAAAGCGCAACAGAT
NONE
OsAffx.25249.1.S1_at--76--5837Chr04:18876283..18876307 (25 bp)
GACCGCCTGCACTGTGGTGAAGGAA
NONE
OsAffx.25249.1.S1_at--172--41734Chr12:14095947..14095971 (25 bp)
CGCCTGCACTGTGGTGAAGGAAAAA
NONE
OsAffx.25249.1.S1_at--511--9791NONE
TAAGAAGGGCATAGCGCCGAGCCGC
NONE
OsAffx.25249.1.S1_at--55--4511Chr03:15568022..15568046 (25 bp)
GCCGAGCCGCCGACTGGCTGTCGAT
NONE
OsAffx.25249.1.S1_at--658--4151Chr03:15568015..15568039 (25 bp)
CGCCGACTGGCTGTCGATGGAAGCA
NONE
OsAffx.25249.1.S1_at--258--4691Chr03:15567987..15568011 (25 bp)
GCGGCGGGATGGAGCACGAGGTTCA
NONE
OsAffx.25249.1.S1_at--326--3391Chr03:15567891..15567915 (25 bp)
CAGCGCCGACTGGACGTGGATGGAG
NONE
OsAffx.25249.1.S1_at--510--7531Chr03:15567863..15567887 (25 bp)
GTGGCAGGACAAAACACGAGGGTCA
NONE
Target Sequence 
ATCAAGGAAGTGGTAGAAGGCGAACTGTGGCCTGTGGCGGGAAAGCGCAACAGATGGGGCACGATGACGGCCGCCTCCGC
GCCGTCCCCCGCTTCGCCGCCTCCGCGCCGACCGCCTGCACTGTGGTGAAGGAAAAAAGGAAGGAGAGGAGGGGAGTTAG
AGATAAGGAAAGAGATAAGAAGGGCATAGCGCCGAGCCGCCGACTGGCTGTCGATGGAAGCAGCGGCGGCGGGATGGAGC
ACGAGGTTCACGCCTCCCTCCTCGCCGGCCGTCGCCACCACGACACACCTTCCTCCTCACCAGTCACGTGGAGGGGTTTG
CCAGCGCCGACTGGACGTGGATGGAGGCGGTGGCAGGACAAAACACGAGGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis