Browse Element(s) Details


OsAffx.30294.1.S1_at

Description tigr:9638.m00448
TID=OsAffx.30294.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative gag-pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0537011/11hypothetical protein
LOC_Os02g397807/11retrotransposon protein, putative, unclassified
LOC_Os04g173206/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g391904/11retrotransposon protein, putative, unclassified
LOC_Os03g357884/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g014304/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g366001/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05300OsAffx.18139.1.S1_at11/1110+2603646..2607190hypothetical protein
LOC_Os10g05309NANA10+2607958..2608341hypothetical protein
LOC_Os10g05320OsAffx.31869.5.S1_x_at11/1110+2611781..2612578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05320OsAffx.31869.4.S1_x_at1/1110+2611781..2612578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05329NANA10+2613607..2613990hypothetical protein
LOC_Os10g05340Os.46557.2.S1_x_at11/1110+2616803..2618194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05340Os.46557.1.S1_x_at4/1110+2616803..2618194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05340OsAffx.21157.1.S1_x_at3/1110+2616803..2618194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05360NANA10+2627496..2629346hypothetical protein
LOC_Os10g05370OsAffx.30294.1.S1_at11/1110+2631640..2632893hypothetical protein
LOC_Os10g05380OsAffx.5954.5.S1_x_at11/1110+2634031..2638573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05380OsAffx.5954.1.S1_x_at3/1110+2634031..2638573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05380OsAffx.5954.3.S1_x_at3/1110+2634031..2638573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05390OsAffx.2425.1.S1_at1/1110+2641495..2642555hypothetical protein
LOC_Os10g05400OsAffx.30295.1.S1_at11/1110+2646459..2648411Protein kinase domain containing protein
LOC_Os10g05410OsAffx.20752.1.S1_at11/1110+2651213..2653297hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30294.1.S1_at--764--2935Chr06:23268216..23268240 (25 bp)
AAGGCTCGTCATGCTATACGGCGTA
LOC_Os06g39190
OsAffx.30294.1.S1_at--840--6893Chr10:2632175..2632199 (25 bp)
GTATGTCCGAATCCCGCAAAGATGC
LOC_Os10g05370
OsAffx.30294.1.S1_at--645--2331Chr10:2632158..2632182 (25 bp)
AAAGATGCCACTGACGCGCAAGCTC
LOC_Os10g05370
OsAffx.30294.1.S1_at--1038--995Chr09:326922..326945 (24 bp)
AGGATCAAGTGCACCTGCTAGCAAA
LOC_Os09g01430
OsAffx.30294.1.S1_at--184--9834Chr09:326964..326988 (25 bp)
TACGGATTCTTCTGAGCCGGGTCAA
LOC_Os09g01430
OsAffx.30294.1.S1_at--362--2911Chr10:2631989..2632013 (25 bp)
AAGGTTGTGGTTCTCATGCACCATC
LOC_Os10g05370
OsAffx.30294.1.S1_at--1003--1454Chr06:23268509..23268533 (25 bp)
AGAAGGGCCTTTCTTTATCACTGCT
LOC_Os06g39190
OsAffx.30294.1.S1_at--732--4797Chr09:327091..327115 (25 bp)
GCTCCCTCTAGAGATCCTAATTATC
LOC_Os09g01430
OsAffx.30294.1.S1_at--956--5831Chr10:2631813..2631837 (25 bp)
GAGCGTAAGACAGATCCCTACAAAT
LOC_Os10g05370
OsAffx.30294.1.S1_at--411--193Chr09:327186..327210 (25 bp)
ATTTCAACAGTTGTCCACCGATCCT
LOC_Os09g01430
OsAffx.30294.1.S1_at--619--7573Chr04:9469111..9469135 (25 bp)
GGGCTATTCTTATGCAGTGGGTTGA
LOC_Os04g17320
Target Sequence 
AAGGCTCGTCATGCTATACGGCGTATGTCCGAATCCCGCAAAGATGCCACTGACGCGCAAGCTCAAGCCTCTGACCAAGC
AGCTCAAGTGGCTAATGTGGAGCGTGGTGCTCCTCTTCCTCCTCGCCGTAGCCGAGTCAGTGAAGGATCAAGTGCACCTG
CTAGCAAAGTAAGGAGAGGCAATCCTACGGATTCTTCTGAGCCGGGTCAAGGTTGTGGTTCTCATGCACCATCATTTGAG
GAAGAGATTCAGTTAGAAGAGGACATTGCCGCTCAGCAAGCTGCTCAGGAAGAAGGGCCTTTCTTTATCACTGCTCCCTC
TAGAGATCCTAATTATCATCGGAGAGTCATAAGGTGGAACCGCAAGTGGACTGAAGTGGAGAAAGAGCGTAAGACAGATC
CCTACAAATTTCAACAGTTGTCCACCGATCCTCGGTTTTGGAACCTTTTTCAGCAGGATTACTATGAGACAGTGATTGCA
CCTAAGAAGGGGGCTATTCTTATGCAGTGGGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis