Browse Element(s) Details


OsAffx.18139.1.S1_at

Description tigr:9638.m00441
TID=OsAffx.18139.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0530011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05250Os.21240.2.S1_at8/1110+2576663..2580782Protein kinase domain containing protein, expressed
LOC_Os10g05270OsAffx.8523.1.S1_at10/1110+2590932..2593264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05270OsAffx.14019.1.S1_at1/1110+2590932..2593264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05280NANA10+2595176..2596265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05290Os.46392.1.S1_s_at11/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.40388.2.S1_x_at11/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.40388.2.S1_s_at11/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.40388.1.S1_at4/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.4648.1.S1_at1/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05300OsAffx.18139.1.S1_at11/1110+2603646..2607190hypothetical protein
LOC_Os10g05309NANA10+2607958..2608341hypothetical protein
LOC_Os10g05320OsAffx.31869.5.S1_x_at11/1110+2611781..2612578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05320OsAffx.31869.4.S1_x_at1/1110+2611781..2612578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05329NANA10+2613607..2613990hypothetical protein
LOC_Os10g05340Os.46557.2.S1_x_at11/1110+2616803..2618194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05340Os.46557.1.S1_x_at4/1110+2616803..2618194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05340OsAffx.21157.1.S1_x_at3/1110+2616803..2618194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05360NANA10+2627496..2629346hypothetical protein
LOC_Os10g05370OsAffx.30294.1.S1_at11/1110+2631640..2632893hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18139.1.S1_at--913--9931Chr10:2606516..2606540 (25 bp)
TACGTCTTCTGCAAGTCATGGCCAG
LOC_Os10g05300
OsAffx.18139.1.S1_at--862--9411Chr10:2606580..2606604 (25 bp)
TCGTCCCCGGAGTTATGAAATGCAT
LOC_Os10g05300
OsAffx.18139.1.S1_at--1028--5871Chr10:2606626..2606650 (25 bp)
GAGCGCCAGCATTAAGGCCCTGTTT
LOC_Os10g05300
OsAffx.18139.1.S1_at--987--2391Chr10:2606850..2606874 (25 bp)
AAACAGGCCCTAACAACCTAGTCAG
LOC_Os10g05300
OsAffx.18139.1.S1_at--736--9651Chr10:2606871..2606895 (25 bp)
TCAGCTCTGATATGCACGTTCCAAG
LOC_Os10g05300
OsAffx.18139.1.S1_at--782--10191Chr10:2606926..2606950 (25 bp)
TATTTCCCTTCAGTCCTACGTAGAA
LOC_Os10g05300
OsAffx.18139.1.S1_at--825--7691Chr10:2606986..2607010 (25 bp)
GGGTAACACTGTTGAGTCCCTCATG
LOC_Os10g05300
OsAffx.18139.1.S1_at--170--6231Chr10:2607014..2607038 (25 bp)
GAGGCCATAGATTTTTTCACATCAG
LOC_Os10g05300
OsAffx.18139.1.S1_at--1015--7491Chr10:2607042..2607066 (25 bp)
GTGGTGATATATTCCCTCATGCTAA
LOC_Os10g05300
OsAffx.18139.1.S1_at--1095--9791Chr10:2607075..2607099 (25 bp)
TAAGCGAGCCCTACAAGGTTTTTGT
LOC_Os10g05300
OsAffx.18139.1.S1_at--644--10351Chr10:2607093..2607117 (25 bp)
TTTTTGTAGACCTTCCACAGCCATA
LOC_Os10g05300
Target Sequence 
TACGTCTTCTGCAAGTCATGGCCAGGCGGCGACAAGAAGTTGTTGCAGGCAGCTATTGTGCTGTTCGTCCCCGGAGTTAT
GAAATGCATTGAGAAACCATGGGCTCTCAGGAGCGCCAGCATTAAGGCCCTGTTTGGCACAGCTCCAGCTCCAGCTCCAC
CCCTCCTGGAGCTGGAGCTCAGCCAAACAGTTTCAGCTCCACTAAAACTGGGAGTGGAGTTGGGTGGAGCTCTCTCACAA
AATGAGTTGGAGTTATACCAAACAGGCCCTAACAACCTAGTCAGCTCTGATATGCACGTTCCAAGGACAGGAAAGGGAGA
TAAAAAAGGGGATAGTATTTCCCTTCAGTCCTACGTAGAACGAGCAAGGAATTTAGTCTTGCGAATTGAAAAAGAGGGTA
ACACTGTTGAGTCCCTCATGGAAGAGGCCATAGATTTTTTCACATCAGACAGTGGTGATATATTCCCTCATGCTAACGAT
AACATAAGCGAGCCCTACAAGGTTTTTGTAGACCTTCCACAGCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis