Browse Element(s) Details


Os.4648.1.S1_at

Description gb:AK105663.1
DB_XREF= gi:32990872
TID=Os.4648.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc finger protein (P0001B06.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-H06, full insert sequence.
FL= gb:AK105663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0985011/11Zinc finger, C2H2 type family protein, expressed
LOC_Os10g253001/11expressed protein
LOC_Os10g052901/11tRNA/rRNA methyltransferase, putative, expressed
LOC_Os03g011101/11RNA methyltransferase, TrmH family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09810OsAffx.10988.1.S1_at5/111+5070218..5071732hypothetical protein
LOC_Os01g09810Os.51226.1.S1_at1/111+5070218..5071732hypothetical protein
LOC_Os01g09820OsAffx.10988.1.S1_at2/111+5075929..5077169NA
LOC_Os01g09820Os.29072.1.S1_at1/111+5075929..5077169NA
LOC_Os01g09830Os.11166.1.S1_s_at11/111+5082635..5083343Glutaredoxin-like family protein, expressed
LOC_Os01g09840OsAffx.23173.1.S1_at10/111+5088666..5089064hypothetical protein
LOC_Os01g09850OsAffx.23572.2.S1_at11/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850Os.4648.2.S1_x_at11/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850Os.4648.1.S1_at11/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850Os.19512.2.S1_x_at1/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09860Os.32248.2.S1_x_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_a_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09870NANA1+5124951..5125409expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0003723molecular_functionRNA binding
GO:0008173molecular_functionRNA methyltransferase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4648.1.S1_at--575--3551Chr01:5098583..5098607 (25 bp)
CATAGCTGGGTAAGTGAGTCGAATT
LOC_Os01g09850
Os.4648.1.S1_at--302--7391Chr01:5098596..5098620 (25 bp)
GTGAGTCGAATTTACCCAGCTCTCT
LOC_Os01g09850
Os.4648.1.S1_at--1019--6131Chr01:5098668..5098692 (25 bp)
GAGGGTATGGGCTGTTCAATTCATA
LOC_Os01g09850
Os.4648.1.S1_at--192--251Chr01:5098713..5098737 (25 bp)
ATATACTGTTGTTTATGCTAGCTAT
LOC_Os01g09850
Os.4648.1.S1_at--994--1211Chr01:5098745..5098769 (25 bp)
AGTTAATTCATCTTCCTACTGTAAT
LOC_Os01g09850
Os.4648.1.S1_at--363--3135Chr10:2601571..2601669 (25 bp)
AATTTTTAGCCATTCTCAGCTCATA
LOC_Os10g05290
Os.4648.1.S1_at--390--3571Chr01:5098796..5098820 (25 bp)
CATAAAGCTGTGTAGAGCTACTGCC
LOC_Os01g09850
Os.4648.1.S1_at--142--4851Chr01:5098812..5098836 (25 bp)
GCTACTGCCATTAGAGCTCCATTTG
LOC_Os01g09850
Os.4648.1.S1_at--140--5911Chr01:5098825..5098849 (25 bp)
GAGCTCCATTTGTAATCAGTTGTTA
LOC_Os01g09850
Os.4648.1.S1_at--185--6651Chr01:5098843..5098867 (25 bp)
GTTGTTACCATTAATCATTCCCTTA
LOC_Os01g09850
Os.4648.1.S1_at--369--3531Chr01:5098858..5098882 (25 bp)
CATTCCCTTAAATTTCTAGTTCCTG
LOC_Os01g09850
Target Sequence 
CATAGCTGGGTAAGTGAGTCGAATTTACCCAGCTCTCTCTCTTTTGATGTTCCAATTGAGGTTTAATAATTCGATGTTCT
TTTGGGAGGGTATGGGCTGTTCAATTCATATATATGGAACTTTTCAAATTATATACTGTTGTTTATGCTAGCTATATATC
ATAGTTAATTCATCTTCCTACTGTAATAATTTTTAGCCATTCTCAGCTCATAAAGCTGTGTAGAGCTACTGCCATTAGAG
CTCCATTTGTAATCAGTTGTTACCATTAATCATTCCCTTAAATTTCTAGTTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis