Browse Element(s) Details


OsAffx.23173.1.S1_at

Description tigr:9629.m00934
TID=OsAffx.23173.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0984010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09810OsAffx.10988.1.S1_at5/111+5070218..5071732hypothetical protein
LOC_Os01g09810Os.51226.1.S1_at1/111+5070218..5071732hypothetical protein
LOC_Os01g09820OsAffx.10988.1.S1_at2/111+5075929..5077169NA
LOC_Os01g09820Os.29072.1.S1_at1/111+5075929..5077169NA
LOC_Os01g09830Os.11166.1.S1_s_at11/111+5082635..5083343Glutaredoxin-like family protein, expressed
LOC_Os01g09840OsAffx.23173.1.S1_at10/111+5088666..5089064hypothetical protein
LOC_Os01g09850OsAffx.23572.2.S1_at11/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850Os.4648.2.S1_x_at11/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850Os.4648.1.S1_at11/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850Os.19512.2.S1_x_at1/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09860Os.32248.2.S1_x_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_a_at11/111+5106751..5113183protein kinase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23173.1.S1_at--635--10371Chr01:5088700..5088724 (25 bp)
TTTTAGCTATAATTACCCCATCTCC
LOC_Os01g09840
OsAffx.23173.1.S1_at--944--10451Chr01:5088702..5088726 (25 bp)
TTAGCTATAATTACCCCATCTCCAC
LOC_Os01g09840
OsAffx.23173.1.S1_at--295--4371Chr01:5088748..5088772 (25 bp)
CCAACAATGTGTACCCCCAAGCAAA
LOC_Os01g09840
OsAffx.23173.1.S1_at--1009--8651Chr01:5088755..5088779 (25 bp)
TGTGTACCCCCAAGCAAACCATCAG
LOC_Os01g09840
OsAffx.23173.1.S1_at--9--2651Chr01:5088771..5088882 (25 bp)
AACCATCAGGCCGAGCAAAGCACTG
LOC_Os01g09840
OsAffx.23173.1.S1_at--354--3531Chr01:5088774..5088885 (25 bp)
CATCAGGCCGAGCAAAGCACTGTTA
LOC_Os01g09840
OsAffx.23173.1.S1_at--593--8411Chr01:5088779..5088890 (25 bp)
GGCCGAGCAAAGCACTGTTAACTAC
LOC_Os01g09840
OsAffx.23173.1.S1_at--336--2351NONE
AAAGCACTGTTAACTACTTCACGGT
NONE
OsAffx.23173.1.S1_at--121--5112Chr12:24583303..24583323 (21 bp)
GCACTGTTAACTACTTCACGGTGAA
NONE
OsAffx.23173.1.S1_at--400--9892Chr12:24583310..24583334 (25 bp)
TACTTCACGGTGAAACAGAATGCAC
NONE
OsAffx.23173.1.S1_at--1067--5534Chr12:24583321..24583345 (25 bp)
GAAACAGAATGCACTCGGTGGCCAG
NONE
Target Sequence 
TTTTAGCTATAATTACCCCATCTCCACCATATATGCACCCCCCTCATCCCAACAATGTGTACCCCCAAGCAAACCATCAG
GCCGAGCAAAGCACTGTTAACTACTTCACGGTGAAACAGAATGCACTCGGTGGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis