Browse Element(s) Details

Os.11166.1.S1_s_at

Description

gb:AK102031.1
DB_XREF= gi:32987240
TID=Os.11166.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0001B06.19 (P0001B06.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033081A01, full insert sequence.
FL= gb:AK101203.1 gb:AK102031.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g09830	11/11	Glutaredoxin-like family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g09800	Os.27112.1.S1_at	11/11	1	+	5057218..5062031	Regulatory protein NPR1, putative, expressed
LOC_Os01g09810	OsAffx.10988.1.S1_at	5/11	1	+	5070218..5071732	hypothetical protein
LOC_Os01g09810	Os.51226.1.S1_at	1/11	1	+	5070218..5071732	hypothetical protein
LOC_Os01g09820	OsAffx.10988.1.S1_at	2/11	1	+	5075929..5077169	NA
LOC_Os01g09820	Os.29072.1.S1_at	1/11	1	+	5075929..5077169	NA
LOC_Os01g09830	Os.11166.1.S1_s_at	11/11	1	+	5082635..5083343	Glutaredoxin-like family protein, expressed
LOC_Os01g09840	OsAffx.23173.1.S1_at	10/11	1	+	5088666..5089064	hypothetical protein
LOC_Os01g09850	OsAffx.23572.2.S1_at	11/11	1	+	5096348..5102725	Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850	Os.4648.2.S1_x_at	11/11	1	+	5096348..5102725	Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850	Os.4648.1.S1_at	11/11	1	+	5096348..5102725	Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850	Os.19512.2.S1_x_at	1/11	1	+	5096348..5102725	Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09860	Os.32248.2.S1_x_at	11/11	1	+	5106751..5113183	protein kinase family protein, putative, expressed
LOC_Os01g09860	Os.32248.1.S1_at	11/11	1	+	5106751..5113183	protein kinase family protein, putative, expressed
LOC_Os01g09860	Os.32248.1.S1_a_at	11/11	1	+	5106751..5113183	protein kinase family protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006118	biological_process	electron transport
GO:0009735	biological_process	response to cytokinin stimulus
GO:0005489	molecular_function	electron transporter activity
GO:0008794	molecular_function	arsenate reductase (glutaredoxin) activity
GO:0030508	molecular_function	thiol-disulfide exchange intermediate activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11166.1.S1_s_at--263--909	1	Chr01:5082863..5082887 (25 bp)	TGCTACATGGCGCACGTCATGAGGC	LOC_Os01g09830
Os.11166.1.S1_s_at--1018--369	1	Chr01:5083142..5083166 (25 bp)	CTATCCTCTCTACCATGGCTTAGCT	LOC_Os01g09830
Os.11166.1.S1_s_at--985--85	1	Chr01:5083156..5083180 (25 bp)	ATGGCTTAGCTCCATGCCTTCCATG	LOC_Os01g09830
Os.11166.1.S1_s_at--386--59	1	Chr01:5083169..5083193 (25 bp)	ATGCCTTCCATGTACATAAGCTGGG	LOC_Os01g09830
Os.11166.1.S1_s_at--1003--987	1	Chr01:5083181..5083205 (25 bp)	TACATAAGCTGGGTTATCTCCGCCA	LOC_Os01g09830
Os.11166.1.S1_s_at--1159--787	1	Chr01:5083192..5083216 (25 bp)	GGTTATCTCCGCCATTTCAGAAATC	LOC_Os01g09830
Os.11166.1.S1_s_at--5--735	1	Chr01:5083230..5083254 (25 bp)	GTGAAAAATTCCACGCCGAAATAAT	LOC_Os01g09830
Os.11166.1.S1_s_at--691--299	1	Chr01:5083252..5083276 (25 bp)	AATACTAAATTTTGTTTGGGCTCAT	LOC_Os01g09830
Os.11166.1.S1_s_at--334--1085	1	Chr01:5083267..5083291 (25 bp)	TTGGGCTCATGTGTTCTTCTGGAAA	LOC_Os01g09830
Os.11166.1.S1_s_at--364--483	1	Chr01:5083271..5083295 (25 bp)	GCTCATGTGTTCTTCTGGAAATCAA	LOC_Os01g09830
Os.11166.1.S1_s_at--122--225	1	Chr01:5083310..5083334 (25 bp)	AAATTCCTGGATCTAAATGTGATTA	LOC_Os01g09830

Target Sequence

TGCTACATGGCGCACGTCATGAGGCGCCTCCTCGCCGCCGTCGGCGCGCACGCCACCGTCATCGAGCTGGAGGGCGGCGC
GGCGGAGGAGGAGGAGGCGGCGCTGGGCGGCGGCGCCGCGCTCCCCGCGCTCTTCGTCGGCGGCGACCCCGTCGGCGGCC
TCGAGGGCCTCATGGGCCTCCACCTCAGCGGCCGCCTCGTCCCGCGCCTCAGAGAGGTCGGCGCCCTCTGCACCTAGCCC
GCGGGGCCGCCACGTGTCCCAGTCGTCGTCTTCCTCCGTCCTATCCTCTCTACCATGGCTTAGCTCCATGCCTTCCATGT
ACATAAGCTGGGTTATCTCCGCCATTTCAGAAATCTAGAGGGGGTGGGGTGAAAAATTCCACGCCGAAATAATACTAAAT
TTTGTTTGGGCTCATGTGTTCTTCTGGAAATCAAAGGGGTTTGTGAGNAAATTCCTGGATCTAAATGTGATTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis