Browse Element(s) Details


Os.32248.1.S1_at

Description gb:AK105501.1
DB_XREF= gi:32990710
TID=Os.32248.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase APK1AArabidopsis thaliana (P0001B06.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-D06, full insert sequence.
FL= gb:AK105501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0986011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09830Os.11166.1.S1_s_at11/111+5082635..5083343Glutaredoxin-like family protein, expressed
LOC_Os01g09840OsAffx.23173.1.S1_at10/111+5088666..5089064hypothetical protein
LOC_Os01g09850OsAffx.23572.2.S1_at11/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850Os.4648.2.S1_x_at11/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850Os.4648.1.S1_at11/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850Os.19512.2.S1_x_at1/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09860Os.32248.2.S1_x_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_a_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09870NANA1+5124951..5125409expressed protein
LOC_Os01g09880OsAffx.23175.1.S1_x_at11/111+5128418..5129675Harpin-induced protein 1 containing protein, expressed
LOC_Os01g09880Os.39373.1.A1_at3/111+5128418..5129675Harpin-induced protein 1 containing protein, expressed
LOC_Os01g09890Os.4960.1.S1_at11/111+5135279..5137727density-regulated protein DRP1 containing protein, expressed
LOC_Os01g09890Os.4960.1.S1_s_at10/111+5135279..5137727density-regulated protein DRP1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32248.1.S1_at--44--8811Chr01:5107243..5107267 (25 bp)
TGTTCCCTTTTCAATCTTGCGAAGA
LOC_Os01g09860
Os.32248.1.S1_at--484--10031Chr01:5107196..5107220 (25 bp)
TAGAGAGTTTTCAGGCCTAGTTTCT
LOC_Os01g09860
Os.32248.1.S1_at--667--8271Chr01:5107183..5107207 (25 bp)
GGCCTAGTTTCTGTACATTACTCAT
LOC_Os01g09860
Os.32248.1.S1_at--949--1411Chr01:5107133..5107157 (25 bp)
AGAAATCAGGATAGTAGCAGGGCAG
LOC_Os01g09860
Os.32248.1.S1_at--151--1371Chr01:5107110..5107134 (25 bp)
AGAGCTTGAGCTGTGGAGTATTCAA
LOC_Os01g09860
Os.32248.1.S1_at--1104--5891Chr01:5107071..5107095 (25 bp)
GAGCTCAGATTTGGTTCCATACTAG
LOC_Os01g09860
Os.32248.1.S1_at--403--7911Chr01:5107059..5107083 (25 bp)
GGTTCCATACTAGGTTTGTCTGCAT
LOC_Os01g09860
Os.32248.1.S1_at--628--2031Chr01:5107051..5107075 (25 bp)
ACTAGGTTTGTCTGCATTTGGATTT
LOC_Os01g09860
Os.32248.1.S1_at--890--211Chr01:5107036..5107060 (25 bp)
ATTTGGATTTGTGATGTCGTCTCTT
LOC_Os01g09860
Os.32248.1.S1_at--132--771Chr01:5107023..5107047 (25 bp)
ATGTCGTCTCTTTTTCAGCTTGTCA
LOC_Os01g09860
Os.32248.1.S1_at--79--9671Chr01:5107009..5107033 (25 bp)
TCAGCTTGTCAGTTTGAGTTCATTT
LOC_Os01g09860
Target Sequence 
TGTTCCCTTTTCAATCTTGCGAAGATAAATATTCAGTTGAATGGAAATAGAGAGTTTTCAGGCCTAGTTTCTGTACATTA
CTCATGTGGAGATAAAAGGCTGTATAGTTCAGAAATCAGGATAGTAGCAGGGCAGAGCTTGAGCTGTGGAGTATTCAAGG
ATTTAATGAGATGAGCTCAGATTTGGTTCCATACTAGGTTTGTCTGCATTTGGATTTGTGATGTCGTCTCTTTTTCAGCT
TGTCAGTTTGAGTTCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis