Browse Element(s) Details


OsAffx.23175.1.S1_x_at

Description gb:NM_188234.1
DB_XREF= gi:34903551
GEN=P0001B06.28
TID=OsAffx.23175.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0001B06.28 (P0001B06.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0988011/11Harpin-induced protein 1 containing protein, expressed
LOC_Os05g110101/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09860Os.32248.2.S1_x_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_a_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09870NANA1+5124951..5125409expressed protein
LOC_Os01g09880OsAffx.23175.1.S1_x_at11/111+5128418..5129675Harpin-induced protein 1 containing protein, expressed
LOC_Os01g09880Os.39373.1.A1_at3/111+5128418..5129675Harpin-induced protein 1 containing protein, expressed
LOC_Os01g09890Os.4960.1.S1_at11/111+5135279..5137727density-regulated protein DRP1 containing protein, expressed
LOC_Os01g09890Os.4960.1.S1_s_at10/111+5135279..5137727density-regulated protein DRP1 containing protein, expressed
LOC_Os01g09900OsAffx.23176.1.S1_x_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.1.S1_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.3.S1_x_at1/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23175.1.S1_x_at--121--1431Chr01:5129281..5129305 (25 bp)
AGAACCCCAACAAGAAGCTCGTCTA
LOC_Os01g09880
OsAffx.23175.1.S1_x_at--222--1451Chr01:5129269..5129293 (25 bp)
AGAAGCTCGTCTACCTCTACGACGA
LOC_Os01g09880
OsAffx.23175.1.S1_x_at--1034--1031Chr01:5129197..5129221 (25 bp)
AGGGATCCGTCCCTGGCTTCGTCCA
LOC_Os01g09880
OsAffx.23175.1.S1_x_at--57--4491Chr01:5129168..5129192 (25 bp)
GCCGGCAACATCACCGTCATCAAGG
LOC_Os01g09880
OsAffx.23175.1.S1_x_at--550--1792Chr05:6144882..6144902 (21 bp)
ACCGACATCAAGAAGTCCGGCGAGT
LOC_Os05g11010
OsAffx.23175.1.S1_x_at--817--2731Chr01:5129087..5129111 (25 bp)
AAGAAGTCCGGCGAGTTCACCATCA
LOC_Os01g09880
OsAffx.23175.1.S1_x_at--802--1011Chr01:5129032..5129056 (25 bp)
AGGTCGGCGGCCTCAAGACCAAGAA
LOC_Os01g09880
OsAffx.23175.1.S1_x_at--1055--1371Chr01:5129017..5129041 (25 bp)
AGACCAAGAAAATCGGCGTGCTCGT
LOC_Os01g09880
OsAffx.23175.1.S1_x_at--1113--4651Chr01:5129002..5129026 (25 bp)
GCGTGCTCGTCCACTGCGAGGGCAT
LOC_Os01g09880
OsAffx.23175.1.S1_x_at--739--6111Chr01:5128985..5129009 (25 bp)
GAGGGCATCAAGGTGGCCGCCCCGG
LOC_Os01g09880
OsAffx.23175.1.S1_x_at--1099--1451Chr01:5128933..5128957 (25 bp)
AGAAGGGCGGCGTCAAGCTCTCCGT
LOC_Os01g09880
Target Sequence 
AGAACCCCAACAAGAAGCTCGTCTACCTCTACGACGACTTCGCCGTCACCGCCGCCACCGCCGCCAACGCCGTCCCGCTC
GGGGAGGGATCCGTCCCTGGCTTCGTCCACGACGCCGGCAACATCACCGTCATCAAGGCCACCGTCTCCGCCTCCGCCCT
CGGCGTCGACCCCACCACCGCCGCCACCGACATCAAGAAGTCCGGCGAGTTCACCATCACCCTCGACCTCGAGACCAAGG
CCGGCGTCAAGGTCGGCGGCCTCAAGACCAAGAAAATCGGCGTGCTCGTCCACTGCGAGGGCATCAAGGTGGCCGCCCCG
GCGCCGCCGCCGCCGCCGGCGAAGAAGAAGAAGGGCGGCGTCAAGCTCTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23175.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis