Browse Element(s) Details


Os.39373.1.A1_at

Description gb:CF301352
DB_XREF= gi:33673113
DB_XREF=7LEAF--06-D01.g1
CLONE=7LEAF--06-D01
TID=Os.39373.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39373 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g098803/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09860Os.32248.2.S1_x_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_a_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09870NANA1+5124951..5125409expressed protein
LOC_Os01g09880OsAffx.23175.1.S1_x_at11/111+5128418..5129675Harpin-induced protein 1 containing protein, expressed
LOC_Os01g09880Os.39373.1.A1_at3/111+5128418..5129675Harpin-induced protein 1 containing protein, expressed
LOC_Os01g09890Os.4960.1.S1_at11/111+5135279..5137727density-regulated protein DRP1 containing protein, expressed
LOC_Os01g09890Os.4960.1.S1_s_at10/111+5135279..5137727density-regulated protein DRP1 containing protein, expressed
LOC_Os01g09900OsAffx.23176.1.S1_x_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.1.S1_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.3.S1_x_at1/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39373.1.A1_at--709--2871Chr01:5128799..5128823 (25 bp)
AAGTGGACCTTCTAGTGACGTCGCC
LOC_Os01g09880
Os.39373.1.A1_at--602--1091NONE
AGTGACGTCGCCCTTATCCTAGGGC
NONE
Os.39373.1.A1_at--922--10071NONE
TAGGGCCCGCATTGCATAATTTTCG
NONE
Os.39373.1.A1_at--674--3651Chr01:5128702..5128726 (25 bp)
CTTCTTCTTCACGTTGGAGTGTAGT
LOC_Os01g09880
Os.39373.1.A1_at--2--6951Chr01:5128687..5128706 (20 bp)
GTAGTAGAAATTCAGACCAATGTCA
LOC_Os01g09880
Os.39373.1.A1_at--104--1711NONE
ACCAATGTCAACTGTCGGATGCTGT
NONE
Os.39373.1.A1_at--422--7091NONE
GTCAACTGTCGGATGCTGTATAAAA
NONE
Os.39373.1.A1_at--423--2291NONE
AAATGGTTTCTGTTGGAATTTGACG
NONE
Os.39373.1.A1_at--690--6151NONE
GAGGTAAGTAGCGACCACGCTGACT
NONE
Os.39373.1.A1_at--698--5851NONE
GACCACGCTGACTAGTGATGCGACG
NONE
Os.39373.1.A1_at--54--7391NONE
GTGATGCGACGGAGGAGTCTTCTTT
NONE
Target Sequence 
AAGTGGACCTTCTAGTGACGTCGCCCTTATCCTAGGGCCCGCATTGCATAATTTTCGGGGGTCTAAAAGAAAAGTTGCTT
TACTGTTTTGTTTTTCTTCTTCTTCACGTTGGAGTGTAGTAGAAATTCAGACCAATGTCAACTGTCGGATGCTGTATAAA
AATGGTTTCTGTTGGAATTTGACGAATTTTGTTTGGGGGGAGGTAAGTAGCGACCACGCTGACTAGTGATGCGACGGAGG
AGTCTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39373.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis