Browse Element(s) Details


OsAffx.23572.2.S1_at

Description tigr:9629.m00936
TID=OsAffx.23572.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C2H2 type, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0985011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09810OsAffx.10988.1.S1_at5/111+5070218..5071732hypothetical protein
LOC_Os01g09810Os.51226.1.S1_at1/111+5070218..5071732hypothetical protein
LOC_Os01g09820OsAffx.10988.1.S1_at2/111+5075929..5077169NA
LOC_Os01g09820Os.29072.1.S1_at1/111+5075929..5077169NA
LOC_Os01g09830Os.11166.1.S1_s_at11/111+5082635..5083343Glutaredoxin-like family protein, expressed
LOC_Os01g09840OsAffx.23173.1.S1_at10/111+5088666..5089064hypothetical protein
LOC_Os01g09850OsAffx.23572.2.S1_at11/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850Os.4648.2.S1_x_at11/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850Os.4648.1.S1_at11/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850Os.19512.2.S1_x_at1/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09860Os.32248.2.S1_x_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_a_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09870NANA1+5124951..5125409expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23572.2.S1_at--119--10051Chr01:5102040..5102064 (25 bp)
TAGATGGCCGTGCATGCCTCTGCAT
LOC_Os01g09850
OsAffx.23572.2.S1_at--1096--4451Chr01:5102055..5102079 (25 bp)
GCCTCTGCATCTCCATGTCTAGAGA
LOC_Os01g09850
OsAffx.23572.2.S1_at--615--9171Chr01:5102167..5102191 (25 bp)
TGCCCGGCCCGTTGACATGAAATAG
LOC_Os01g09850
OsAffx.23572.2.S1_at--687--3491Chr01:5102182..5102206 (25 bp)
CATGAAATAGCACCCCAAGCCCGAG
LOC_Os01g09850
OsAffx.23572.2.S1_at--753--871Chr01:5102205..5102325 (25 bp)
AGGCCCTTAGCTCAACGATCTGTGT
LOC_Os01g09850
OsAffx.23572.2.S1_at--405--1571Chr01:5102213..5102333 (25 bp)
AGCTCAACGATCTGTGTTTTAACAC
LOC_Os01g09850
OsAffx.23572.2.S1_at--571--10491Chr01:5102327..5102351 (25 bp)
TTAACACTGCACTGGAGTAGGGCTC
LOC_Os01g09850
OsAffx.23572.2.S1_at--993--6612Chr01:5102343..5102367 (25 bp)
GTAGGGCTCCCATCGGATGGTACAA
LOC_Os01g09850
OsAffx.23572.2.S1_at--46--10351Chr01:5102518..5102542 (25 bp)
TTATTCCATAATAAGCCGTTTTGGC
LOC_Os01g09850
OsAffx.23572.2.S1_at--327--10111Chr01:5102589..5102613 (25 bp)
TATGGTTGATCATCTTGTCGCTTCC
LOC_Os01g09850
OsAffx.23572.2.S1_at--232--2611Chr01:5102661..5102685 (25 bp)
AACGCTGCTATGAGTTTCTGTATTC
LOC_Os01g09850
Target Sequence 
TAGATGGCCGTGCATGCCTCTGCATCTCCATGTCTAGAGAGAGAGAGAAATTTGGATGGATGGATGGATGGATGCATGGT
GATGATGGGGGAGACAGGTGAAGGAGGGAGAAAGCCGAAACTTTTGTTGCCCGGCCCGTTGACATGAAATAGCACCCCAA
GCCCGAGGCCCTTAGCTCAACGATCTGTGTTTTAACACTGCACTGGAGTAGGGCTCCCATCGGATGGTACAATAAGCTAA
AGCTAAAGAATAAGCCAAATTTTGAATTTTCAAACTTAATTTTGAGATTGATTTTGAAATATTTTCAATGTAGTTTTTTT
TCAGCATTGGCTTTTAAGTTACAAAGAACACATATATAAAAGTTTTACCTACAAATTTATTTTTATTCCATAATAAGCCG
TTTTGGCTTATTAGAAAAAAAGCCAACCGATGGAGGCCTAGGATAGGATGTACTATGGTTGATCATCTTGTCGCTTCCCT
CCGCACCAACGGCGGAGGAAGGAAAAATGGAAATGTACTAAAATAAACGCTGCTATGAGTTTCTGTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23572.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis