Browse Element(s) Details


Os.4648.2.S1_x_at

Description gb:NM_188227.1
DB_XREF= gi:34903537
GEN=P0001B06.21
TID=Os.4648.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4648 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative zinc finger protein (P0001B06.21), mRNA.
PROD=putative zinc finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0985011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09810OsAffx.10988.1.S1_at5/111+5070218..5071732hypothetical protein
LOC_Os01g09810Os.51226.1.S1_at1/111+5070218..5071732hypothetical protein
LOC_Os01g09820OsAffx.10988.1.S1_at2/111+5075929..5077169NA
LOC_Os01g09820Os.29072.1.S1_at1/111+5075929..5077169NA
LOC_Os01g09830Os.11166.1.S1_s_at11/111+5082635..5083343Glutaredoxin-like family protein, expressed
LOC_Os01g09840OsAffx.23173.1.S1_at10/111+5088666..5089064hypothetical protein
LOC_Os01g09850OsAffx.23572.2.S1_at11/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850Os.4648.2.S1_x_at11/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850Os.4648.1.S1_at11/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09850Os.19512.2.S1_x_at1/111+5096348..5102725Zinc finger, C2H2 type family protein, expressed
LOC_Os01g09860Os.32248.2.S1_x_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_a_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09870NANA1+5124951..5125409expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4648.2.S1_x_at--729--3911Chr01:5097875..5097899 (25 bp)
CTGGACCAGGAGTTCATCGGGAGCT
LOC_Os01g09850
Os.4648.2.S1_x_at--437--1511Chr01:5097924..5097948 (25 bp)
AGCAGGCCGGCCTCAGCTTCGGGTT
LOC_Os01g09850
Os.4648.2.S1_x_at--970--8372Chr01:5098090..5098114 (25 bp)
GGCGAGCACGCACAACAGCAGCAGC
LOC_Os01g09850
Os.4648.2.S1_x_at--1136--2571Chr01:5098157..5098181 (25 bp)
AACGTGTCGAGCACTTGCGTCGGCG
LOC_Os01g09850
Os.4648.2.S1_x_at--779--2051Chr01:5098215..5098239 (25 bp)
ACTTCATCGCAGCAGACGAGAGCAG
LOC_Os01g09850
Os.4648.2.S1_x_at--925--1031Chr01:5098250..5098274 (25 bp)
AGGTCCGATCGTGACACCGGCAATG
LOC_Os01g09850
Os.4648.2.S1_x_at--726--5031Chr01:5098290..5098314 (25 bp)
GCAACGACGGCCTCACCAGGGACTT
LOC_Os01g09850
Os.4648.2.S1_x_at--73--1731Chr01:5098304..5098328 (25 bp)
ACCAGGGACTTCTTGGGTCTCCGAG
LOC_Os01g09850
Os.4648.2.S1_x_at--159--3651Chr01:5098330..5098354 (25 bp)
CTTCTCCCACGGCAACATAATGAGC
LOC_Os01g09850
Os.4648.2.S1_x_at--397--3571Chr01:5098345..5098369 (25 bp)
CATAATGAGCATGGCCGGCTTCGAT
LOC_Os01g09850
Os.4648.2.S1_x_at--113--10631Chr01:5098364..5098388 (25 bp)
TTCGATCCCTGCATGTCGACGACGT
LOC_Os01g09850
Target Sequence 
CTGGACCAGGAGTTCATCGGGAGCTCCACGCCGGAGAGCGGCGGCGCGCAGCAGGCCGGCCTCAGCTTCGGGTTCTCGTC
GACGTCATCCGCGCCGCCGCACCCCGCCGCCTCCTCGGCGCACATGTCCGCCACCGCGCTGCTGCAGAAGGCGGCGCAGA
TGGGCGCGACGCTGAGCCGCCCGTCGAGCCACGCCCACATGGCGGCGGCGGCGGCGGCGAGCACGCACAACAGCAGCAGC
AGCGCCGCCACCACCAATGCTCCCCCTCCTCCTCCTACCAGCAACGTGTCGAGCACTTGCGTCGGCGCCGGCGGCTACGG
GCTCGCCTTCGAAGCGTCCCACTTCATCGCAGCAGACGAGAGCAGCAGGGGCGCCAGGTCCGATCGTGACACCGGCAATG
GCGTCGCCGGAGCCGGCAACGACGGCCTCACCAGGGACTTCTTGGGTCTCCGAGCCTTCTCCCACGGCAACATAATGAGC
ATGGCCGGCTTCGATCCCTGCATGTCGACGACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4648.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis