Browse Element(s) Details


OsAffx.8523.1.S1_at

Description gb:NM_194813.1
DB_XREF= gi:37530985
TID=OsAffx.8523.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0034A02.11), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0527010/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05240Os.10864.1.S1_at11/1110+2571520..2572815F-box domain containing protein, expressed
LOC_Os10g05250Os.21240.2.S1_at8/1110+2576663..2580782Protein kinase domain containing protein, expressed
LOC_Os10g05270OsAffx.8523.1.S1_at10/1110+2590932..2593264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05270OsAffx.14019.1.S1_at1/1110+2590932..2593264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05280NANA10+2595176..2596265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05290Os.46392.1.S1_s_at11/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.40388.2.S1_x_at11/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.40388.2.S1_s_at11/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.40388.1.S1_at4/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.4648.1.S1_at1/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05300OsAffx.18139.1.S1_at11/1110+2603646..2607190hypothetical protein
LOC_Os10g05309NANA10+2607958..2608341hypothetical protein
LOC_Os10g05320OsAffx.31869.5.S1_x_at11/1110+2611781..2612578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05320OsAffx.31869.4.S1_x_at1/1110+2611781..2612578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05329NANA10+2613607..2613990hypothetical protein
LOC_Os10g05340Os.46557.2.S1_x_at11/1110+2616803..2618194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05340Os.46557.1.S1_x_at4/1110+2616803..2618194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05340OsAffx.21157.1.S1_x_at3/1110+2616803..2618194transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8523.1.S1_at--480--6931Chr10:2590987..2591011 (25 bp)
GTAGGCCTAGATCTGACTCGGCTTC
LOC_Os10g05270
OsAffx.8523.1.S1_at--1006--8271Chr10:2591043..2591067 (25 bp)
GGCATAATCCTTCAACGACTCGAAT
LOC_Os10g05270
OsAffx.8523.1.S1_at--469--4091Chr10:2591058..2591082 (25 bp)
CGACTCGAATCGTGTTCTACAGAAG
LOC_Os10g05270
OsAffx.8523.1.S1_at--1160--5371Chr10:2591088..2591112 (25 bp)
GAAGAATACCTCAACACTCCAAGCA
LOC_Os10g05270
OsAffx.8523.1.S1_at--798--4791Chr10:2591124..2591148 (25 bp)
GCTCCGACTGAGACTATCGACTATG
LOC_Os10g05270
OsAffx.8523.1.S1_at--995--1831Chr10:2591230..2591254 (25 bp)
ACGACTATACTCCTCTCTTTTTCAA
LOC_Os10g05270
OsAffx.8523.1.S1_at--1003--2151NONE
ACAGCGGCTCAACATTGATGGCACT
NONE
OsAffx.8523.1.S1_at--498--8491Chr10:2593048..2593072 (25 bp)
TGGCACTAATGTGTTCCGTACTCCA
LOC_Os10g05270
OsAffx.8523.1.S1_at--1118--10811Chr10:2593103..2593127 (25 bp)
TTGGATACCCTCATGGCTACCGGAG
LOC_Os10g05270
OsAffx.8523.1.S1_at--55--4851Chr10:2593118..2593142 (25 bp)
GCTACCGGAGCACCAGAGAATGTCG
LOC_Os10g05270
OsAffx.8523.1.S1_at--54--1251Chr10:2593189..2593213 (25 bp)
AGTTGACTCGGGAAGCACTCGGCAG
LOC_Os10g05270
Target Sequence 
GTAGGCCTAGATCTGACTCGGCTTCGACCACAGTCGGATCTAGCTCCAAGGAAGTCGGCATAATCCTTCAACGACTCGAA
TCGTGTTCTACAGAAGAAATCGAAGAATACCTCAACACTCCAAGCATCGATTCCTACGCTCCGACTGAGACTATCGACTA
TGGTGACTTCGATGATGAATATGACTTCGACAATTTCGACGATTACGATGACCTTGATGAAGAATTCGACGACAACTATG
AAGACGACTATACTCCTCTCTTTTTCAACGTTTTTATGGCAGACAATGAGACGGAAGAACAGCGGCTCAACATTGATGGC
ACTAATGTGTTCCGTACTCCACAGCAGAACACGGTTGCAGCAATCGCGCTCTTGGATACCCTCATGGCTACCGGAGCACC
AGAGAATGTCGCTCAAATTCTGAATCAAACAAAGACGATGATCGCCGCGTCGGTCCTAGTTGACTCGGGAAGCACTCGGC
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis