Browse Element(s) Details


Os.10864.1.S1_at

Description gb:AK072788.1
DB_XREF= gi:32982811
TID=Os.10864.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0034A02.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142B11, full insert sequence.
FL= gb:AK072788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0524011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05220Os.31936.1.S1_at11/1110+2542990..2548420tRNA-guanine transglycosylases, various specificities family protein, expressed
LOC_Os10g05230Os.10464.1.S1_at11/1110+2551663..2556201Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g05240Os.10864.1.S1_at11/1110+2571520..2572815F-box domain containing protein, expressed
LOC_Os10g05250Os.21240.2.S1_at8/1110+2576663..2580782Protein kinase domain containing protein, expressed
LOC_Os10g05270OsAffx.8523.1.S1_at10/1110+2590932..2593264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05270OsAffx.14019.1.S1_at1/1110+2590932..2593264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05280NANA10+2595176..2596265retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10864.1.S1_at--927--9531Chr10:2572230..2572254 (25 bp)
TCTACTGGATGCTCTTCGGCTACGA
LOC_Os10g05240
Os.10864.1.S1_at--1047--2491Chr10:2572259..2572283 (25 bp)
AACATCCTCGAGTTCAATTTGGTGA
LOC_Os10g05240
Os.10864.1.S1_at--877--8691Chr10:2572306..2572330 (25 bp)
TGTGCCGACGCATATCCATGAAGAT
LOC_Os10g05240
Os.10864.1.S1_at--208--5931Chr10:2572370..2572394 (25 bp)
GAGCTTGGGCTCATTGTCATGTCAA
LOC_Os10g05240
Os.10864.1.S1_at--64--8571Chr10:2572418..2572442 (25 bp)
TGGATGATCGATTTCGACGGCCTCC
LOC_Os10g05240
Os.10864.1.S1_at--851--7471Chr10:2572504..2572528 (25 bp)
GTGTGTCAATCCGACCAAGGTGCTG
LOC_Os10g05240
Os.10864.1.S1_at--899--131Chr10:2572542..2572566 (25 bp)
ATTACAATGAGCTGTTCGTCGCGTC
LOC_Os10g05240
Os.10864.1.S1_at--817--7271Chr10:2572567..2572591 (25 bp)
GTCCACCAGGATCTTCATGGTCAAT
LOC_Os10g05240
Os.10864.1.S1_at--1010--3991Chr10:2572655..2572679 (25 bp)
CGTCCTATATATGCCGTGTATCCGA
LOC_Os10g05240
Os.10864.1.S1_at--988--8751Chr10:2572671..2572695 (25 bp)
TGTATCCGATCGCAAGTTTCTATGA
LOC_Os10g05240
Os.10864.1.S1_at--533--511Chr10:2572708..2572732 (25 bp)
ATCGTCTTCTGCATAAGCCAGTGGT
LOC_Os10g05240
Target Sequence 
TCTACTGGATGCTCTTCGGCTACGACAACAACATCCTCGAGTTCAATTTGGTGAACCACAGCCTCTCCGTGGTGTATGTG
CCGACGCATATCCATGAAGATCATGATGGCCTCTACCCGATTACTCTCCAAGAGGGGACAGAGCTTGGGCTCATTGTCAT
GTCAAGATCCTGCATGCAGATATGGCAGTGGATGATCGATTTCGACGGCCTCCCCGGGTGGCTGCCGCTCGAACCGATCT
ACCTCGACAATCTTCTTCATCTGAGCGCGGGGGAGTGTGTCAATCCGACCAAGGTGCTGGGGTTTTCGCAGGATTACAAT
GAGCTGTTCGTCGCGTCGTCCACCAGGATCTTCATGGTCAATCTTGAGTCATTGCGGTTCAAGGAGCTTTGCAAAATGGA
CGAGTTCTTGGACTCCCCCGACTCCCGTCCTATATATGCCGTGTATCCGATCGCAAGTTTCTATGATGCAGATAGTTCAT
CGTCTTCTGCATAAGCCAGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis