Browse Element(s) Details


Os.21240.2.S1_at

Description gb:BQ908738
DB_XREF= gi:22307516
DB_XREF=T014B04
CLONE=T014B04
TID=Os.21240.2
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative wall-associated protein kinase (OSJNBa0034A02.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g052508/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05230Os.10464.1.S1_at11/1110+2551663..2556201Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g05240Os.10864.1.S1_at11/1110+2571520..2572815F-box domain containing protein, expressed
LOC_Os10g05250Os.21240.2.S1_at8/1110+2576663..2580782Protein kinase domain containing protein, expressed
LOC_Os10g05270OsAffx.8523.1.S1_at10/1110+2590932..2593264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05270OsAffx.14019.1.S1_at1/1110+2590932..2593264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05280NANA10+2595176..2596265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05290Os.46392.1.S1_s_at11/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.40388.2.S1_x_at11/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.40388.2.S1_s_at11/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.40388.1.S1_at4/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.4648.1.S1_at1/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05300OsAffx.18139.1.S1_at11/1110+2603646..2607190hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009620biological_processresponse to fungi
GO:0005618cellular_componentcell wall
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21240.2.S1_at--785--7211Chr10:2580229..2580253 (25 bp)
GTCGAGTATGTCAATTGTTATGAGA
LOC_Os10g05250
Os.21240.2.S1_at--737--4231Chr10:2580373..2580397 (25 bp)
CCAGAAATGAGAGAAGTAGCCGAAC
LOC_Os10g05250
Os.21240.2.S1_at--1003--1951Chr10:2580399..2580423 (25 bp)
ACTGGTGATGCTTAAAATGGCTTGG
LOC_Os10g05250
Os.21240.2.S1_at--754--7031NONE
GTAAATTAGCTCACAAGATCCTTTC
NONE
Os.21240.2.S1_at--561--2791NONE
AAGATCCTTTCAGCACTACTTGTTC
NONE
Os.21240.2.S1_at--848--9651NONE
TCAGCACTACTTGTTCTACTAGAAT
NONE
Os.21240.2.S1_at--31--7751Chr10:2580587..2580611 (25 bp)
GGTGTAATTGTTATCTGAACTTCTG
LOC_Os10g05250
Os.21240.2.S1_at--14--3451Chr10:2580655..2580679 (25 bp)
CAGTAACAGTAATTTGCTACCGCTA
LOC_Os10g05250
Os.21240.2.S1_at--1046--10191Chr10:2580681..2580705 (25 bp)
TATTCCTTTTGATCCGTGATTAACA
LOC_Os10g05250
Os.21240.2.S1_at--405--8851Chr10:2580690..2580714 (25 bp)
TGATCCGTGATTAACAAGTACTATT
LOC_Os10g05250
Os.21240.2.S1_at--87--2851Chr10:2580705..2580729 (25 bp)
AAGTACTATTATCCGACATGTCAAA
LOC_Os10g05250
Target Sequence 
GTCGAGTATGTCAATTGTTATGAGAAAGAANACNNGTGGGAGGATTATGTTTGACAATGAGATCNCTGCNGAGGAAAACA
TGGCCACCCTTGAANCNNTTGGCATTCTAGCAATGAAGTGTTTAAGTGATAATATAGATGAACGACCAGAAATGAGAGAA
GTAGCCGAACNACTGGTGATGCTTAAAATGGCTTGGAAGCAGCTCANAAGGAAACATATAAGTTGTCATTTTCAAGACAG
CCANTGGGAAACCACCNAAGCTTGACNCCAGAAGATTTATGAGGAATGAAGTAAATTAGCTCACAAGATCCTTTCAGCAC
TACTTGTTCTACTAGAATCGATCANATTNAANTTTCTCATNTTTGGTGTAATTGTTATCTGAACTTCTGTTAGCANTTTG
GAACACNTAGTTATANCANGTCTGTATGTTATAANCAGTAACAGTAATTTGCTACCGCTANTATTCCTTTTGATCCGTGA
TTAACAAGTACTATTATCCGACATGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21240.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis