Browse Element(s) Details


Os.31936.1.S1_at

Description gb:AK106467.1
DB_XREF= gi:32991676
TID=Os.31936.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative tRNA-guanine transglycosylase (OSJNAa0029P06.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-H07, full insert sequence.
FL= gb:AK106467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0522011/11tRNA-guanine transglycosylases, various specificities family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05190Os.47463.1.S1_x_at6/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.52305.2.S1_x_at5/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.14491.2.S1_x_at4/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190OsAffx.5780.1.A1_at3/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05200Os.46847.1.S1_at11/1110+2533530..2535649F-box domain containing protein, expressed
LOC_Os10g05200Os.46847.2.S1_x_at11/1110+2533530..2535649F-box domain containing protein, expressed
LOC_Os10g05210Os.11061.1.S1_at11/1110+2538161..2541395F-box domain containing protein, expressed
LOC_Os10g05210Os.46074.1.A1_at6/1110+2538161..2541395F-box domain containing protein, expressed
LOC_Os10g05220Os.31936.1.S1_at11/1110+2542990..2548420tRNA-guanine transglycosylases, various specificities family protein, expressed
LOC_Os10g05230Os.10464.1.S1_at11/1110+2551663..2556201Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g05240Os.10864.1.S1_at11/1110+2571520..2572815F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31936.1.S1_at--974--6951Chr10:2547821..2547845 (25 bp)
GTAGCTGTTTCACATGCCAGAACCA
LOC_Os10g05220
Os.31936.1.S1_at--223--2171Chr10:2547845..2547869 (25 bp)
ACACTCGTGCTTACCTTAATCATTT
LOC_Os10g05220
Os.31936.1.S1_at--1023--611Chr10:2547886..2547910 (25 bp)
ATGCTGGCTCAGATTCTACTGGAGA
LOC_Os10g05220
Os.31936.1.S1_at--279--10391Chr10:2548026..2548050 (25 bp)
TTTTCCGGTTGATACGAGACACGAT
LOC_Os10g05220
Os.31936.1.S1_at--800--8111Chr10:2548058..2548082 (25 bp)
GGACAGTTTGATCGCTTTCGGCAGC
LOC_Os10g05220
Os.31936.1.S1_at--722--951Chr10:2548092..2548116 (25 bp)
AGGACAGGCGTGCTTATCTTGCAGC
LOC_Os10g05220
Os.31936.1.S1_at--320--5071Chr10:2548112..2548136 (25 bp)
GCAGCTGCTGTGATCTAACAAGGAT
LOC_Os10g05220
Os.31936.1.S1_at--809--9811Chr10:2548137..2548161 (25 bp)
TAACTTCTCCCTAGATGTACACTGT
LOC_Os10g05220
Os.31936.1.S1_at--740--7031Chr10:2548153..2548177 (25 bp)
GTACACTGTTAGACCTCTTGAGGCT
LOC_Os10g05220
Os.31936.1.S1_at--361--551Chr10:2548229..2548253 (25 bp)
ATCCCTCTCTTCGAAAATCCAAGTG
LOC_Os10g05220
Os.31936.1.S1_at--878--5491Chr10:2548257..2548281 (25 bp)
GAACAACTTTTTGCAAATCCCTGGA
LOC_Os10g05220
Target Sequence 
GTAGCTGTTTCACATGCCAGAACCACACTCGTGCTTACCTTAATCATTTGCTCAATGTCCATGAGATGCTGGCTCAGATT
CTACTGGAGATACACAATACACATCATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAAAACCGGACAGTTTGA
TCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCT
AGATGTACACTGTTAGACCTCTTGAGGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACA
ATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis