Browse Element(s) Details


Os.52305.2.S1_x_at

Description gb:AK102509.1
DB_XREF= gi:32987718
TID=Os.52305.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095G06, full insert sequence.
FL= gb:AK102509.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1074011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g051905/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10680NANA8+6287738..6288025hypothetical protein
LOC_Os08g10690NANA8+6291160..6291399hypothetical protein
LOC_Os08g10700NANA8+6292639..6292896hypothetical protein
LOC_Os08g10710OsAffx.30226.4.S1_at4/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.4.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.2.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.24587.1.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.1.S1_x_at2/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.442.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.19052.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.442.1.S1_x_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.2.S1_s_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10730Os.51445.1.S1_at11/118+6307531..6309280expressed protein
LOC_Os08g10740Os.52305.2.S1_x_at11/118+6312819..6318031transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g10740Os.52305.1.S1_at11/118+6312819..6318031transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g10760OsAffx.14773.1.S1_at11/118+6318967..6320497hypothetical protein
LOC_Os08g10770NANA8+6322550..6327493retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10780Os.52707.1.S1_at10/118+6327947..6333275BED zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52305.2.S1_x_at--731--832Chr10:2528667..2528691 (25 bp)
ATGGATGGATGTACCCTGTAGAGCG
LOC_Os10g05190
Os.52305.2.S1_x_at--28--7911Chr08:6315711..6315735 (25 bp)
GGTTGCTGACCTTGAAACGCTTTGT
LOC_Os08g10740
Os.52305.2.S1_x_at--356--3852Chr10:2528736..2528760 (25 bp)
CTGAGGGCTCCATTGCAGAGGCATA
LOC_Os10g05190
Os.52305.2.S1_x_at--74--3012Chr10:2528768..2528792 (25 bp)
AATGAGTGCTTGACTGCTTGCTCAA
LOC_Os10g05190
Os.52305.2.S1_x_at--1042--9112Chr10:2528800..2528824 (25 bp)
TGCTGATGTTGACACTAGGCACAAT
LOC_Os10g05190
Os.52305.2.S1_x_at--908--2332Chr10:2528840..2528864 (25 bp)
AAAGAGCGTGTTCCTATGAGTAGAT
LOC_Os10g05190
Os.52305.2.S1_x_at--931--7871Chr08:6315884..6315908 (25 bp)
GGTTTATCTATTTTCCAGCATGGAG
LOC_Os08g10740
Os.52305.2.S1_x_at--154--7611Chr08:6315921..6315945 (25 bp)
GGGCACCAAGGCTTACATATGAGTA
LOC_Os08g10740
Os.52305.2.S1_x_at--48--8011Chr08:6315960..6315984 (25 bp)
GGATGGTTTGGTATGTCCTCAACAA
LOC_Os08g10740
Os.52305.2.S1_x_at--690--5311Chr08:6316107..6316131 (25 bp)
GAAGGATTTACAAACTGCTGGCAGT
LOC_Os08g10740
Os.52305.2.S1_x_at--704--171Chr08:6316204..6316228 (25 bp)
ATTTTCAGTTTTGACTCTGTGATAA
LOC_Os08g10740
Target Sequence 
ATGGATGGATGTACCCTGTAGAGCGTAGGTTGCTGACCTTGAAACGCTTTGTAAGGAACATGGCAAGGCCTGAGGGCTCC
ATTGCAGAGGCATATGTCGCAAATGAGTGCTTGACTGCTTGCTCAAGGTATTTTGCTGATGTTGACACTAGGCACAATCG
TGAGGGTAGGAACAAAGAGCGTGTTCCTATGAGTAGATGTGGTTTATCTATTTTCCAGCATGGAGCAAATCTGTTGGGGG
CACCAAGGCTTACATATGAGTAGAAGGAGTATGATAGGATGGTTTGGTATGTCCTCAACAATACTAAGGAGGTCGAGCCA
TTTATAGAGATTTACATGAAGGATTTACAAACTGCTGGCAGTCATGATGTTGAGGGGAACCTTGCTAAGGAATTTCCAGG
ATGGTTTAGGAAACATGTGAGTCATTATTTAGGTATTTTCAGTTTTGACTCTGTGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52305.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis