Browse Element(s) Details


OsAffx.19052.1.S1_at

Description tigr:9639.m02567
TID=OsAffx.19052.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2844010/11hypothetical protein
LOC_Os02g123901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g144101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g279101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g139601/11retrotransposon protein, putative, unclassified
LOC_Os10g014501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g357401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g111601/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g055501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g464501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g017801/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g107101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g233201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g137901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g733801/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28410Os.7544.1.S1_at9/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.5217.1.S1_at1/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28420Os.52253.1.S1_at11/1111+15864770..15865563expressed protein
LOC_Os11g28420OsAffx.8000.1.S1_x_at1/1111+15864770..15865563expressed protein
LOC_Os11g28430OsAffx.31183.1.S1_at10/1111+15867195..15869881hypothetical protein
LOC_Os11g28430OsAffx.18697.2.A1_at7/1111+15867195..15869881hypothetical protein
LOC_Os11g28440OsAffx.19052.1.S1_at10/1111+15873308..15874748hypothetical protein
LOC_Os11g28450OsAffx.19053.1.S1_at11/1111+15876188..15876945hypothetical protein
LOC_Os11g28460OsAffx.8934.1.S1_x_at1/1111+15877993..15878668hypothetical protein
LOC_Os11g28470OsAffx.19055.1.S1_at11/1111+15883922..15885418hypothetical protein
LOC_Os11g28480OsAffx.31184.1.S1_at10/1111+15886678..15893723expressed protein
LOC_Os11g28480Os.3448.1.S1_a_at1/1111+15886678..15893723expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19052.1.S1_at--433--5071NONE
GCAAGGCATAATTTAATTCGTACAT
NONE
OsAffx.19052.1.S1_at--1115--7011Chr11:15873470..15873494 (25 bp)
GTACATTTTTCGGTATTGTTGCTAT
LOC_Os11g28440
OsAffx.19052.1.S1_at--481--78917Chr11:15873584..15873782 (25 bp)
GGTTCATAGTACCTGTATATGTTGA
LOC_Os11g28440
OsAffx.19052.1.S1_at--801--6651Chr11:15873778..15873802 (25 bp)
GTTGATGATATGCTTACTAGTATTT
LOC_Os11g28440
OsAffx.19052.1.S1_at--961--2011Chr11:15873793..15873817 (25 bp)
ACTAGTATTTGTCATATGGCGTTAA
LOC_Os11g28440
OsAffx.19052.1.S1_at--12--8451Chr11:15873809..15873833 (25 bp)
TGGCGTTAAGAGATCAGTACATTGA
LOC_Os11g28440
OsAffx.19052.1.S1_at--52--3291Chr11:15874582..15874606 (25 bp)
CAAAGCACATTGATACCCAGTATCA
LOC_Os11g28440
OsAffx.19052.1.S1_at--1008--7391Chr11:15874615..15874639 (25 bp)
GTGATGTAGTCACACAAGGTAAGCT
LOC_Os11g28440
OsAffx.19052.1.S1_at--392--6471Chr11:15874652..15874676 (25 bp)
GATAAGCACTCATGATAATTCTACT
LOC_Os11g28440
OsAffx.19052.1.S1_at--1145--6451Chr11:15874665..15874689 (25 bp)
GATAATTCTACTGATATGATGACAA
LOC_Os11g28440
OsAffx.19052.1.S1_at--1004--5611Chr11:15874685..15874709 (25 bp)
GACAAAGCCAGATTCTGTTGCTAAG
LOC_Os11g28440
Target Sequence 
GCAAGGCATAATTTAATTCGTACATTTTTCGGTATTGTTGCTATGCATGATCTTGAGCTTGAGCAATTAGATGTGAAGAC
AATATTTTTATATGGAGAGCTTGAGGAGGAGATATACATGGACCAGTCAGAAGGGTTCATAGTACCTGTATATGTTGATG
ATATGCTTACTAGTATTTGTCATATGGCGTTAAGAGATCAGTACATTGAAGAAATTATTGAGTATCAAAGTGCCATATAC
TTCACTAAAGATAAGATGTTCCATGAGAGGACAAAGCACATTGATACCCAGTATCATTATGTTTGTGATGTAGTCACACA
AGGTAAGCTAAAGATATGCAAGATAAGCACTCATGATAATTCTACTGATATGATGACAAAGCCAGATTCTGTTGCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis