Browse Element(s) Details


Os.3448.1.S1_a_at

Description gb:AK073189.1
DB_XREF= gi:32983212
TID=Os.3448.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) precursor monofunctional aspartokinase-like protein (OSJNBa0093F16.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033004I10, full insert sequence.
FL= gb:AK073189.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7030011/11aspartate kinase family protein, expressed
LOC_Os11g284801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70260Os.33220.1.S1_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.2.S1_x_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.3.S1_x_at9/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70270Os.11696.1.S1_a_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.1.S1_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.2.S1_x_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70280OsAffx.23987.1.S1_at11/111+41031643..41032571hypothetical protein
LOC_Os01g70280OsAffx.4205.1.S1_x_at1/111+41031643..41032571hypothetical protein
LOC_Os01g70290OsAffx.9650.1.S1_at11/111+41033824..41034972hypothetical protein
LOC_Os01g70300Os.3448.1.S1_a_at11/111+41035489..41039809aspartate kinase family protein, expressed
LOC_Os01g70300Os.3448.2.S1_x_at11/111+41035489..41039809aspartate kinase family protein, expressed
LOC_Os01g70310Os.13595.2.S1_x_at11/111+41041065..41044028inducer of CBF expression 1 protein, putative, expressed
LOC_Os01g70310Os.13595.1.S1_at10/111+41041065..41044028inducer of CBF expression 1 protein, putative, expressed
LOC_Os01g70320Os.5280.1.S1_at10/111+41050234..41057356expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008652biological_processamino acid biosynthesis
GO:0009067biological_processaspartate family amino acid biosynthesis
GO:0004072molecular_functionaspartate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3448.1.S1_a_at--977--5032Chr11:15888247..15888372 (25 bp)
GCAGAGGGCAATAATATCACTCATT
LOC_Os11g28480
Os.3448.1.S1_a_at--122--9691Chr01:41036152..41036176 (25 bp)
TCACTCATTGGAAACGTACGGCGAT
LOC_Os01g70300
Os.3448.1.S1_a_at--711--6991Chr01:41036137..41036161 (25 bp)
GTACGGCGATCATCTCTTATACTGG
LOC_Os01g70300
Os.3448.1.S1_a_at--823--2891Chr01:41035877..41035900 (24 bp)
AAGGTTAACATGTCTCTGATTGTTC
LOC_Os01g70300
Os.3448.1.S1_a_at--805--9471Chr01:41035863..41035887 (25 bp)
TCTGATTGTTCATGATAGCGAGGCA
LOC_Os01g70300
Os.3448.1.S1_a_at--1118--2331Chr01:41035839..41035863 (25 bp)
AAAGCAGTGCATAAAGGCCCTCCAC
LOC_Os01g70300
Os.3448.1.S1_a_at--946--4851Chr01:41035831..41035855 (25 bp)
GCATAAAGGCCCTCCACCAGGCGTT
LOC_Os01g70300
Os.3448.1.S1_a_at--328--1731Chr01:41035816..41035840 (25 bp)
ACCAGGCGTTCTTCGAGGACGATGT
LOC_Os01g70300
Os.3448.1.S1_a_at--551--951Chr01:41035801..41035825 (25 bp)
AGGACGATGTCCTGACAGAAGTCGA
LOC_Os01g70300
Os.3448.1.S1_a_at--841--2851Chr01:41035783..41035807 (25 bp)
AAGTCGAGGAAGAAGCCCTTCACAT
LOC_Os01g70300
Os.3448.1.S1_a_at--709--8191Chr01:41035776..41035800 (25 bp)
GGAAGAAGCCCTTCACATGAGCTGA
LOC_Os01g70300
Target Sequence 
GCAGAGGGCAATAATATCACTCATTGGAAACGTACGGCGATCATCTCTTATACTGGAAAAGGCCTTTCAAGTGTTGAGGA
AAAGCGGGGTGAATGTCCAGATGATCTCGCAAGGTGCATCCAAGGTTAACATGTCTCTGATTGTTCATGATAGCGAGGCA
AAGCAGTGCATAAAGGCCCTCCACCAGGCGTTCTTCGAGGACGATGTCCTGACAGAAGTCGAGGAAGAAGCCCTTCACAT
GAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3448.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis