Browse Element(s) Details


Os.33220.3.S1_x_at

Description gb:NM_189991.1
DB_XREF= gi:34907065
GEN=OSJNBa0093F16.22
TID=Os.33220.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33220 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0093F16.22 (OSJNBa0093F16.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0093F16.22 (OSJNBa0093F16.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g702609/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70220Os.31816.2.S1_x_at10/111+40981087..40991244YDG/SRA domain containing protein, expressed
LOC_Os01g70230OsAffx.9651.1.S1_at10/111+40991939..40993391hypothetical protein
LOC_Os01g70230OsAffx.9651.1.S1_x_at10/111+40991939..40993391hypothetical protein
LOC_Os01g70240Os.53542.1.S1_x_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240Os.53542.1.S1_at10/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.2.S1_x_at9/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70240OsAffx.23986.1.S1_at6/111+40995490..40998710heavy metal-associated domain containing protein, expressed
LOC_Os01g70250Os.23698.1.A1_at9/111+41001750..41004370DnaJ domain containing protein, expressed
LOC_Os01g70260Os.33220.1.S1_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.2.S1_x_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.3.S1_x_at9/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70270Os.11696.1.S1_a_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.1.S1_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.2.S1_x_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70280OsAffx.23987.1.S1_at11/111+41031643..41032571hypothetical protein
LOC_Os01g70280OsAffx.4205.1.S1_x_at1/111+41031643..41032571hypothetical protein
LOC_Os01g70290OsAffx.9650.1.S1_at11/111+41033824..41034972hypothetical protein
LOC_Os01g70300Os.3448.1.S1_a_at11/111+41035489..41039809aspartate kinase family protein, expressed
LOC_Os01g70300Os.3448.2.S1_x_at11/111+41035489..41039809aspartate kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33220.3.S1_x_at--675--10151Chr01:41007730..41007754 (25 bp)
TATCGCTGGCGTACGATTTCGTGCC
LOC_Os01g70260
Os.33220.3.S1_x_at--213--1031Chr01:41007789..41007813 (25 bp)
AGGTCTCTGCAGGTGAACCTCAATT
LOC_Os01g70260
Os.33220.3.S1_x_at--112--51Chr01:41007895..41007920 (25 bp)
ATTGAGCCTCAAGCCGTCGAATGTG
LOC_Os01g70260
Os.33220.3.S1_x_at--1040--4691Chr01:41007958..41007982 (25 bp)
GCGGCGTTTCAAGGCTAATTGCATC
LOC_Os01g70260
Os.33220.3.S1_x_at--603--1431Chr01:41007998..41008022 (25 bp)
AGAACTGGCCAGCAGCCTTTATTCT
LOC_Os01g70260
Os.33220.3.S1_x_at--386--91Chr01:41008018..41008042 (25 bp)
ATTCTGCCCCAGAGTGCTACCAAAG
LOC_Os01g70260
Os.33220.3.S1_x_at--86--711Chr01:41009543..41009567 (25 bp)
ATGATCCTTGGCGTGTTGCTAACTG
LOC_Os01g70260
Os.33220.3.S1_x_at--503--7651Chr01:41009567..41009591 (25 bp)
GGGAGAGACCCAACAGATCATTTTT
LOC_Os01g70260
Os.33220.3.S1_x_at--517--1571Chr01:41009620..41009644 (25 bp)
AGCTAGATGGCTTCGGCACATGCAA
LOC_Os01g70260
Os.33220.3.S1_x_at--519--8351Chr01:41011225..41011249 (25 bp)
GGCGGCAGAAAGACGGAACTCCACA
NONE
Os.33220.3.S1_x_at--683--2551Chr01:41011241..41011265 (25 bp)
AACTCCACAGTGAAAGGCAGGCAGT
NONE
Target Sequence 
TATCGCTGGCGTACGATTTCGTGCCCGGGGGCAGCCTTGAGGATGTGATGAAGAGGGTGAGGTCTCTGCAGGTGAACCTC
AATTGGGATGCAAGGAACAGGATTGCGATTGGAGTGGCCAAGGGATTGAGCCTCAAGCCGTCGAATGTGATGCTAGATGA
AGATTTCGAACCGAGATTGGCAGATTGCGGCGTTTCAAGGCTAATTGCATCAGGTTCAGCTGATCCAGAACTGGCCAGCA
GCCTTTATTCTGCCCCAGAGTGCTACCAAAGCAGCAGATACACAGATAAGAGCGATGTCTACAGTTTTGGCATGATCCTT
GGCGTGTTGCTAACTGGGAGAGACCCAACAGATCATTTTTTCTCGGGAGAAACCGGGCGCGGTGGATTAGCTAGATGGCT
TCGGCACATGCAACAATCTGGTGACGCAAAAGACGCACTGGATAGTAGTGTCTTAGGAGAGGAAGGGGAAGAAGATGAGA
TGGCGAAGGCGGCAGAAAGACGGAACTCCACAGTGAAAGGCAGGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33220.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis