Browse Element(s) Details


OsAffx.9650.1.S1_at

Description tigr:9629.m06945
TID=OsAffx.9650.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7029011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70260Os.33220.1.S1_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.2.S1_x_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.3.S1_x_at9/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70270Os.11696.1.S1_a_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.1.S1_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.2.S1_x_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70280OsAffx.23987.1.S1_at11/111+41031643..41032571hypothetical protein
LOC_Os01g70280OsAffx.4205.1.S1_x_at1/111+41031643..41032571hypothetical protein
LOC_Os01g70290OsAffx.9650.1.S1_at11/111+41033824..41034972hypothetical protein
LOC_Os01g70300Os.3448.1.S1_a_at11/111+41035489..41039809aspartate kinase family protein, expressed
LOC_Os01g70300Os.3448.2.S1_x_at11/111+41035489..41039809aspartate kinase family protein, expressed
LOC_Os01g70310Os.13595.2.S1_x_at11/111+41041065..41044028inducer of CBF expression 1 protein, putative, expressed
LOC_Os01g70310Os.13595.1.S1_at10/111+41041065..41044028inducer of CBF expression 1 protein, putative, expressed
LOC_Os01g70320Os.5280.1.S1_at10/111+41050234..41057356expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9650.1.S1_at--702--4391Chr01:41034378..41034402 (25 bp)
GCCACCGCCGTATGTTTATGACAGA
LOC_Os01g70290
OsAffx.9650.1.S1_at--20--2011Chr01:41034398..41034422 (25 bp)
ACAGAACATACTTGGGCCGATGGCT
LOC_Os01g70290
OsAffx.9650.1.S1_at--657--151Chr01:41034449..41034473 (25 bp)
ATTATGGCTCGAAGATCTGCATCTC
LOC_Os01g70290
OsAffx.9650.1.S1_at--900--1671Chr01:41034511..41034535 (25 bp)
AGCCTCACGTGGAGTCACCTGGGAA
LOC_Os01g70290
OsAffx.9650.1.S1_at--589--6611Chr01:41034592..41034616 (25 bp)
GTTGGCATTTGTTCAAGCACCCATG
LOC_Os01g70290
OsAffx.9650.1.S1_at--1128--6231Chr01:41034642..41034666 (25 bp)
GATGGATTCGCAGCCACAATTAGTT
LOC_Os01g70290
OsAffx.9650.1.S1_at--628--1651Chr01:41034671..41034695 (25 bp)
CTTGCAAGGAGTTTGAACCGCCGGA
LOC_Os01g70290
OsAffx.9650.1.S1_at--112--5191Chr01:41034705..41034729 (25 bp)
GCAATGCAGGGATCCTCAACTTGTC
LOC_Os01g70290
OsAffx.9650.1.S1_at--75--2051Chr01:41034723..41034747 (25 bp)
ACTTGTCAACCTGGGTTCCGGCAAG
LOC_Os01g70290
OsAffx.9650.1.S1_at--362--10671Chr01:41034738..41034762 (25 bp)
TTCCGGCAAGTTCTGCGTCACAAGG
LOC_Os01g70290
OsAffx.9650.1.S1_at--145--3291Chr01:41034756..41034780 (25 bp)
CACAAGGTTCTTTCGCAATCAGGCT
LOC_Os01g70290
Target Sequence 
GCCACCGCCGTATGTTTATGACAGAACATACTTGGGCCGATGGCTGGAGATCAGATCTTATGTTGTGGTTGATTATGGCT
CGAAGATCTGCATCTCTGTCAAAGGTGTTGGAACCTATTGTATGGACAGGAGGAGCCTCACGTGGAGTCACCTGGGAAAA
TGGATGCTACCCTTCATTGGCAAGGTTGAGTATGTACCTGAGGTCAAGCTCTGGGTTGGCATTTGTTCAAGCACCCATGA
ACTGGCTGCTGCTGATCTCTCATCGATGGATTCGCAGCCACAATTAGTTGGTACTTGCAAGGAGTTTGAACCGCCGGAGG
AATGGAAGCAATGCAGGGATCCTCAACTTGTCAACCTGGGTTCCGGCAAGTTCTGCGTCACAAGGTTCTTTCGCAATCAG
GCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis