Browse Element(s) Details


Os.13595.1.S1_at

Description gb:AK102594.1
DB_XREF= gi:32987803
TID=Os.13595.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0093F16.27 (OSJNBa0093F16.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098G23, full insert sequence.
FL= gb:AK102594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7031010/11inducer of CBF expression 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70270Os.11696.1.S1_a_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.1.S1_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.2.S1_x_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70280OsAffx.23987.1.S1_at11/111+41031643..41032571hypothetical protein
LOC_Os01g70280OsAffx.4205.1.S1_x_at1/111+41031643..41032571hypothetical protein
LOC_Os01g70290OsAffx.9650.1.S1_at11/111+41033824..41034972hypothetical protein
LOC_Os01g70300Os.3448.1.S1_a_at11/111+41035489..41039809aspartate kinase family protein, expressed
LOC_Os01g70300Os.3448.2.S1_x_at11/111+41035489..41039809aspartate kinase family protein, expressed
LOC_Os01g70310Os.13595.2.S1_x_at11/111+41041065..41044028inducer of CBF expression 1 protein, putative, expressed
LOC_Os01g70310Os.13595.1.S1_at10/111+41041065..41044028inducer of CBF expression 1 protein, putative, expressed
LOC_Os01g70320Os.5280.1.S1_at10/111+41050234..41057356expressed protein
LOC_Os01g70330Os.22821.1.S1_a_at11/111+41065947..41070532Prefoldin subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13595.1.S1_at--919--851Chr01:41041242..41041266 (25 bp)
ATGGCATATATGCTGTTTATCTAGG
LOC_Os01g70310
Os.13595.1.S1_at--891--4951Chr01:41041239..41041263 (25 bp)
GCATATATGCTGTTTATCTAGGAGA
LOC_Os01g70310
Os.13595.1.S1_at--931--611Chr01:41041233..41041257 (25 bp)
ATGCTGTTTATCTAGGAGAACTGAT
LOC_Os01g70310
Os.13595.1.S1_at--214--3711Chr01:41041222..41041246 (25 bp)
CTAGGAGAACTGATGAGATGAGGCT
LOC_Os01g70310
Os.13595.1.S1_at--1089--3791Chr01:41041199..41041223 (25 bp)
CTCGCCATCTAGAGACATGTGTGAT
LOC_Os01g70310
Os.13595.1.S1_at--783--4432Chr10:9614356..9614375 (20 bp)
GCCATCTAGAGACATGTGTGATGAT
NONE
Os.13595.1.S1_at--841--6291Chr01:41041171..41041195 (25 bp)
GATGATGTAACTGGGTTTCTTTCTT
LOC_Os01g70310
Os.13595.1.S1_at--889--6271Chr01:41041168..41041192 (25 bp)
GATGTAACTGGGTTTCTTTCTTTCT
LOC_Os01g70310
Os.13595.1.S1_at--255--8751Chr01:41041166..41041190 (25 bp)
TGTAACTGGGTTTCTTTCTTTCTGT
LOC_Os01g70310
Os.13595.1.S1_at--1147--4331Chr01:41041084..41041108 (25 bp)
CCATGTCCATTATCATGATGAGAAT
LOC_Os01g70310
Os.13595.1.S1_at--922--5951Chr01:41041065..41041089 (25 bp)
GAGAATATGAACCCAGTGTCTTTTG
NONE
Target Sequence 
ATGGCATATATGCTGTTTATCTAGGAGAACTGATGAGATGAGGCTCGCCATCTAGAGACATGTGTGATGATGATGATGTA
ACTGGGTTTCTTTCTTTCTGTTGTCGTTTTTTTTTCTGAATGTTGTTTGTGATGTAATAGGATCTTTGTCCATTGAAACC
ATGTCCATTATCATGATGAGAATATGAACCCAGTGTCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis