Browse Element(s) Details


Os.22821.1.S1_a_at

Description gb:AK068358.1
DB_XREF= gi:32978376
TID=Os.22821.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0052O12.6 (OSJNBa0052O12.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146G08, full insert sequence.
FL= gb:AK068358.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7033011/11Prefoldin subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70310Os.13595.2.S1_x_at11/111+41041065..41044028inducer of CBF expression 1 protein, putative, expressed
LOC_Os01g70310Os.13595.1.S1_at10/111+41041065..41044028inducer of CBF expression 1 protein, putative, expressed
LOC_Os01g70320Os.5280.1.S1_at10/111+41050234..41057356expressed protein
LOC_Os01g70330Os.22821.1.S1_a_at11/111+41065947..41070532Prefoldin subunit family protein, expressed
LOC_Os01g70340Os.28507.1.S1_at11/111+41070852..41077671expressed protein
LOC_Os01g70350OsAffx.21841.1.S1_at9/111+41082603..41083734hypothetical protein
LOC_Os01g70360Os.42735.1.S1_at11/111+41086484..41090638Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_s_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0016272cellular_componentprefoldin complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22821.1.S1_a_at--488--8431Chr01:41069850..41069874 (25 bp)
GGCCTTCACAGGGTCTATTATTGAA
LOC_Os01g70330
Os.22821.1.S1_a_at--517--8851Chr01:41069877..41069901 (25 bp)
TGATGATAATATTTCAACCCTTCAA
LOC_Os01g70330
Os.22821.1.S1_a_at--253--10511Chr01:41069897..41069921 (25 bp)
TTCAACCTTCAAAGAGTGCTGCTTT
LOC_Os01g70330
Os.22821.1.S1_a_at--544--3291Chr01:41069906..41069928 (23 bp)
CAAAGAGTGCTGCTTTGCAGAATCC
LOC_Os01g70330
Os.22821.1.S1_a_at--759--4351Chr01:41070383..41070407 (25 bp)
CCAACGCATTGATGGGTGTTACTTG
LOC_Os01g70330
Os.22821.1.S1_a_at--335--7431Chr01:41070398..41070422 (25 bp)
GTGTTACTTGTGATAGCTCTGTGCA
LOC_Os01g70330
Os.22821.1.S1_a_at--1004--291Chr01:41070410..41070434 (25 bp)
ATAGCTCTGTGCAAGCATTTTGTGA
LOC_Os01g70330
Os.22821.1.S1_a_at--590--4951Chr01:41070424..41070448 (25 bp)
GCATTTTGTGATTTGTGTAGCACTA
LOC_Os01g70330
Os.22821.1.S1_a_at--1033--6951Chr01:41070440..41070464 (25 bp)
GTAGCACTACATACAGTGACCTCAT
LOC_Os01g70330
Os.22821.1.S1_a_at--974--1111Chr01:41070454..41070478 (25 bp)
AGTGACCTCATCTGGTCCTTGCATT
LOC_Os01g70330
Os.22821.1.S1_a_at--580--7791Chr01:41070467..41070491 (25 bp)
GGTCCTTGCATTTGCCTTTATGGAA
LOC_Os01g70330
Target Sequence 
GGCCTTCACAGGGTCTATTATTGAACATGATGATAATATTTCAACCCTTCAACCTTCAAAGAGTGCTGCTTTGCAGAATC
CTGCTAGTTCATCTTCAAGACCTGTATCTAGATTCAAGATGCAGAAGGGAGGGCGTTGAGACCATATCGTTAACACTAGG
ATGAGTGCGAAACCGTCAACTTAGATCTTTGGTAACATCTGCATTGTCAACAACTGCTATAAGCGAAAGCTGCATTGTCA
ACAACTGCTATAAGCGAAAGCGACAGGTGTGGTATCAAGACCACAGTTCTAAGATGAGACCTTGGAGCTAGCTTGTCTGT
GCGCGGATGAGAAAATTCTTTATACCCAGAGTGTAGGGCTGTAGGCACTAGTTTTGGTCTGAGGATTCAGACATTTAGGG
AAAGTTCCTGTAATTCTTGTTCTAGTTTACATTGATGCCAACAGCCCAACGCATTGATGGGTGTTACTTGTGATAGCTCT
GTGCAAGCATTTTGTGATTTGTGTAGCACTACATACAGTGACCTCATCTGGTCCTTGCATTTGCCTTTATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22821.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis