Browse Element(s) Details


OsAffx.21841.1.S1_at

Description tigr:9629.m06952
TID=OsAffx.21841.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g703509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70330Os.22821.1.S1_a_at11/111+41065947..41070532Prefoldin subunit family protein, expressed
LOC_Os01g70340Os.28507.1.S1_at11/111+41070852..41077671expressed protein
LOC_Os01g70350OsAffx.21841.1.S1_at9/111+41082603..41083734hypothetical protein
LOC_Os01g70360Os.42735.1.S1_at11/111+41086484..41090638Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_s_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70380Os.9796.1.S1_at11/111+41101347..41105453Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70390Os.20144.3.S1_at9/111+41107291..41111719expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21841.1.S1_at--136--6611Chr01:41083662..41083686 (25 bp)
GTTGGGGGCTTATTGGTTTACACAT
LOC_Os01g70350
OsAffx.21841.1.S1_at--828--7871Chr01:41083648..41083672 (25 bp)
GGTTTACACATTTTTGCAAGGAGAT
LOC_Os01g70350
OsAffx.21841.1.S1_at--977--2992Chr07:24584446..24584470 (25 bp)
AATGATATACATACGACCCTGTTGT
NONE
OsAffx.21841.1.S1_at--98--232Chr07:24584442..24584466 (25 bp)
ATATACATACGACCCTGTTGTCCGG
NONE
OsAffx.21841.1.S1_at--536--9832Chr07:24584439..24584463 (25 bp)
TACATACGACCCTGTTGTCCGGCTA
NONE
OsAffx.21841.1.S1_at--1162--8811Chr04:6371456..6371558 (25 bp)
TGTTGTCCGGCTACCGTGTGCTGAT
NONE
OsAffx.21841.1.S1_at--702--4251NONE
CCGGCTACCGTGTGCTGATTGCTGA
NONE
OsAffx.21841.1.S1_at--99--3851Chr01:41082658..41082682 (25 bp)
CTGCATTGCTTGATTATGAGATCCT
LOC_Os01g70350
OsAffx.21841.1.S1_at--562--6551Chr01:41082647..41082671 (25 bp)
GATTATGAGATCCTAATCCTGGATG
LOC_Os01g70350
OsAffx.21841.1.S1_at--703--6031Chr01:41082641..41082665 (25 bp)
GAGATCCTAATCCTGGATGACATTA
LOC_Os01g70350
OsAffx.21841.1.S1_at--101--9771Chr01:41082634..41082658 (25 bp)
TAATCCTGGATGACATTAATGTATC
LOC_Os01g70350
Target Sequence 
GTTGGGGGCTTATTGGTTTACACATTTTTGCAAGGAGATGATCCATATAAAAGGAAATACAAAAATGATATACATACGAC
CCTGTTGTCCGGCTACCGTGTGCTGATTGCTGAAGAATCTGCATTGCTTGATTATGAGATCCTAATCCTGGATGACATTA
ATGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis