Browse Element(s) Details


Os.28507.1.S1_at

Description gb:AK111454.1
DB_XREF= gi:32996663
TID=Os.28507.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0052O12.7 (OSJNBa0052O12.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-C02, full insert sequence.
FL= gb:AK111454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7034011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70320Os.5280.1.S1_at10/111+41050234..41057356expressed protein
LOC_Os01g70330Os.22821.1.S1_a_at11/111+41065947..41070532Prefoldin subunit family protein, expressed
LOC_Os01g70340Os.28507.1.S1_at11/111+41070852..41077671expressed protein
LOC_Os01g70350OsAffx.21841.1.S1_at9/111+41082603..41083734hypothetical protein
LOC_Os01g70360Os.42735.1.S1_at11/111+41086484..41090638Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_s_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70380Os.9796.1.S1_at11/111+41101347..41105453Serine palmitoyltransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28507.1.S1_at--609--8291Chr01:41076645..41076669 (25 bp)
GGCTTGTGGCTGACACTTCAGGCAT
LOC_Os01g70340
Os.28507.1.S1_at--100--911Chr01:41076223..41076650 (25 bp)
AGGCATCCCCTGATCAATTTCGAGA
LOC_Os01g70340
Os.28507.1.S1_at--338--371Chr01:41076211..41076231 (21 bp)
ATCAATTTCGAGAGCCCATTTTGCC
LOC_Os01g70340
Os.28507.1.S1_at--307--9871Chr01:41075617..41075641 (25 bp)
TACTTGGCCGGCAAGCTAGGACTCA
LOC_Os01g70340
Os.28507.1.S1_at--818--10091Chr01:41075601..41075625 (25 bp)
TAGGACTCACACAATCTCATCTTCA
LOC_Os01g70340
Os.28507.1.S1_at--182--6431Chr01:41071123..41071147 (25 bp)
GATCTTGTTGAGCTGCACCGGCGAT
LOC_Os01g70340
Os.28507.1.S1_at--729--8311Chr01:41071085..41071109 (25 bp)
GGCTACTACTGACCACGTCATGGCA
LOC_Os01g70340
Os.28507.1.S1_at--48--7131Chr01:41071069..41071093 (25 bp)
GTCATGGCACTCGTTTACAGCACAA
LOC_Os01g70340
Os.28507.1.S1_at--406--2151Chr01:41071053..41071077 (25 bp)
ACAGCACAAGTAGTTCCTGCCATTA
LOC_Os01g70340
Os.28507.1.S1_at--23--4991Chr01:41070945..41070969 (25 bp)
GCATGCTGCTCTGGTTAATTAACTG
LOC_Os01g70340
Os.28507.1.S1_at--983--7691Chr01:41070921..41070945 (25 bp)
GGTGGCTTAGTCGTCACAGGATTAA
LOC_Os01g70340
Target Sequence 
GGCTTGTGGCTGACACTTCAGGCATCCCCTGATCAATTTCGAGAGCCCATTTTGCCCCAGATACCAAAGAGCTACCTTAG
AATCAAGGATAGCAACATGAAGGTGGAAGTGGTGATGAAGTACTTGGCCGGCAAGCTAGGACTCACACAATCTCATCTTC
AGNNNNNNNNNNNNNNNNNAGGGCAGCTTCTTCCTCCCTTCTTGCTGGTCAAAAATGTCAGAGACAGCATCTGGTGCTCA
TCACTGCGACCAAGCTGCAGGGAAGACGACGACGGCGACGGCGAGGATGATCTTGTTGAGCTGCACCGGCGATCGCCGGC
GGCGGCGGCTACTACTGACCACGTCATGGCACTCGTTTACAGCACAAGTAGTTCCTGCCATTAATTAGCTAATAATAATG
TCCATCCATCGATCTGTAATTAATCAACGAGTTCTTTCATTATTTCGTCCGACCCCCAGCTGATCTGCATGCTGCTCTGG
TTAATTAACTGGTGGCTTAGTCGTCACAGGATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis