Browse Element(s) Details


OsAffx.23988.1.S1_s_at

Description tigr:9629.m06954
TID=OsAffx.23988.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=aminotransferase, classes I and II, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7037011/11Serine palmitoyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70330Os.22821.1.S1_a_at11/111+41065947..41070532Prefoldin subunit family protein, expressed
LOC_Os01g70340Os.28507.1.S1_at11/111+41070852..41077671expressed protein
LOC_Os01g70350OsAffx.21841.1.S1_at9/111+41082603..41083734hypothetical protein
LOC_Os01g70360Os.42735.1.S1_at11/111+41086484..41090638Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_s_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70380Os.9796.1.S1_at11/111+41101347..41105453Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70390Os.20144.3.S1_at9/111+41107291..41111719expressed protein
LOC_Os01g70400Os.20144.1.S1_a_at11/111+41111973..41113613expressed protein
LOC_Os01g70410Os.16047.1.S1_at11/111+41113087..41115739Protein kinase domain containing protein, expressed
LOC_Os01g70420NANA1+41117049..41119258hypothetical protein
LOC_Os01g70430Os.28544.2.S1_x_at11/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70430Os.28544.1.S1_at10/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030148biological_processsphingolipid biosynthesis
GO:0046512biological_processsphingosine biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0016020cellular_componentmembrane
GO:0004758molecular_functionserine C-palmitoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23988.1.S1_s_at--1122--4971Chr01:41094040..41094064 (25 bp)
GCATGAAAAGACTACATCTGCTGAG
LOC_Os01g70370
OsAffx.23988.1.S1_s_at--773--2091Chr01:41094027..41094051 (25 bp)
ACATCTGCTGAGAAACTGAAGAAGA
LOC_Os01g70370
OsAffx.23988.1.S1_s_at--1148--7351Chr01:41093998..41094022 (25 bp)
GTGAACACTGACTGATAACTGGAAC
LOC_Os01g70370
OsAffx.23988.1.S1_s_at--818--6451Chr01:41093985..41094009 (25 bp)
GATAACTGGAACTCTACAAGCAATA
LOC_Os01g70370
OsAffx.23988.1.S1_s_at--861--5191Chr01:41093966..41093990 (25 bp)
GCAATATATATACTGGGTCATCTAC
LOC_Os01g70370
OsAffx.23988.1.S1_s_at--931--9591Chr01:41093949..41093973 (25 bp)
TCATCTACCCTTTTATTCTTTCCTT
LOC_Os01g70370
OsAffx.23988.1.S1_s_at--313--10571Chr01:41093934..41093958 (25 bp)
TTCTTTCCTTTGTTTCTGAATTGGT
LOC_Os01g70370
OsAffx.23988.1.S1_s_at--865--1271Chr01:41093907..41093931 (25 bp)
AGATCATTACTTGTATTCAGAGGAA
LOC_Os01g70370
OsAffx.23988.1.S1_s_at--706--6191Chr01:41093888..41093912 (25 bp)
GAGGAAGCGAAATTTTCACTGTTAT
LOC_Os01g70370
OsAffx.23988.1.S1_s_at--250--3331Chr01:41093872..41093896 (25 bp)
CACTGTTATAACGTATTCTGAATAT
LOC_Os01g70370
OsAffx.23988.1.S1_s_at--746--6071Chr01:41093844..41093868 (25 bp)
GAGTAAATCTCTGAAATCATGTAGA
LOC_Os01g70370
Target Sequence 
GCATGAAAAGACTACATCTGCTGAGAAACTGAAGAAGATTCAGTGAACACTGACTGATAACTGGAACTCTACAAGCAATA
TATATACTGGGTCATCTACCCTTTTATTCTTTCCTTTGTTTCTGAATTGGTTTAGATCATTACTTGTATTCAGAGGAAGC
GAAATTTTCACTGTTATAACGTATTCTGAATATTGTGAGTAAATCTCTGAAATCATGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23988.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis