Browse Element(s) Details


Os.20144.1.S1_a_at

Description gb:AK067717.1
DB_XREF= gi:32977735
TID=Os.20144.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20144 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0052O12.12 (OSJNBa0052O12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013117F22, full insert sequence.
FL= gb:AK059880.1 gb:AK059975.1 gb:AK067717.1 gb:AK060605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7040011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70360Os.42735.1.S1_at11/111+41086484..41090638Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_s_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70380Os.9796.1.S1_at11/111+41101347..41105453Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70390Os.20144.3.S1_at9/111+41107291..41111719expressed protein
LOC_Os01g70400Os.20144.1.S1_a_at11/111+41111973..41113613expressed protein
LOC_Os01g70410Os.16047.1.S1_at11/111+41113087..41115739Protein kinase domain containing protein, expressed
LOC_Os01g70420NANA1+41117049..41119258hypothetical protein
LOC_Os01g70430Os.28544.2.S1_x_at11/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70430Os.28544.1.S1_at10/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70440Os.34543.1.S1_at11/111+41124729..41125358expressed protein
LOC_Os01g70450NANA1+41129495..41131500hypothetical protein
LOC_Os01g70460Os.15295.3.S1_x_at11/111+41134008..41135229expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20144.1.S1_a_at--362--1191Chr01:41113020..41113044 (25 bp)
AGTACCTCTACATCGGCGCAGCAGT
LOC_Os01g70400
Os.20144.1.S1_a_at--522--2091Chr01:41113029..41113053 (25 bp)
ACATCGGCGCAGCAGTGTTCGTCGT
LOC_Os01g70400
Os.20144.1.S1_a_at--701--9411Chr01:41113047..41113071 (25 bp)
TCGTCGTCGTGTTCTGCGTTATCGA
LOC_Os01g70400
Os.20144.1.S1_a_at--343--9411Chr01:41113050..41113074 (25 bp)
TCGTCGTGTTCTGCGTTATCGAGAT
LOC_Os01g70400
Os.20144.1.S1_a_at--257--6731Chr01:41113057..41113081 (25 bp)
GTTCTGCGTTATCGAGATGGACAAA
LOC_Os01g70400
Os.20144.1.S1_a_at--785--6011Chr01:41113070..41113094 (25 bp)
GAGATGGACAAACCGGACAAGCCAC
LOC_Os01g70400
Os.20144.1.S1_a_at--412--8151Chr01:41113084..41113108 (25 bp)
GGACAAGCCACACAACTTTGAGCCG
LOC_Os01g70400
Os.20144.1.S1_a_at--659--2651Chr01:41113088..41113112 (25 bp)
AAGCCACACAACTTTGAGCCGGAGA
LOC_Os01g70400
Os.20144.1.S1_a_at--481--2191Chr01:41113093..41113117 (25 bp)
ACACAACTTTGAGCCGGAGATCTAC
LOC_Os01g70400
Os.20144.1.S1_a_at--392--2531Chr01:41113097..41113121 (25 bp)
AACTTTGAGCCGGAGATCTACATGA
LOC_Os01g70400
Os.20144.1.S1_a_at--700--5871Chr01:41113103..41113127 (25 bp)
GAGCCGGAGATCTACATGATGGAGA
LOC_Os01g70400
Target Sequence 
AGTACCTCTACATCGGCGCAGCAGTGTTCGTCGTCGTGTTCTGCGTTATCGAGATGGACAAACCGGACAAGCCACACAAC
TTTGAGCCGGAGATCTACATGATGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20144.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis