Browse Element(s) Details


Os.28544.1.S1_at

Description gb:AK120263.1
DB_XREF= gi:37989886
TID=Os.28544.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative carbonyl reductase-like protein (OSJNBa0052O12.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047B18, full insert sequence.
FL= gb:AK120263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7043010/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g595101/11PHD finger transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70370OsAffx.23988.1.S1_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_s_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70380Os.9796.1.S1_at11/111+41101347..41105453Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70390Os.20144.3.S1_at9/111+41107291..41111719expressed protein
LOC_Os01g70400Os.20144.1.S1_a_at11/111+41111973..41113613expressed protein
LOC_Os01g70410Os.16047.1.S1_at11/111+41113087..41115739Protein kinase domain containing protein, expressed
LOC_Os01g70420NANA1+41117049..41119258hypothetical protein
LOC_Os01g70430Os.28544.2.S1_x_at11/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70430Os.28544.1.S1_at10/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70440Os.34543.1.S1_at11/111+41124729..41125358expressed protein
LOC_Os01g70450NANA1+41129495..41131500hypothetical protein
LOC_Os01g70460Os.15295.3.S1_x_at11/111+41134008..41135229expressed protein
LOC_Os01g70470Os.5458.1.A1_at11/111+41139395..41140977expressed protein
LOC_Os01g70470Os.9623.2.S1_x_at1/111+41139395..41140977expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28544.1.S1_at--340--1251Chr01:41121098..41121122 (25 bp)
AGTTGGTGCTAGCTTCTGTTTGAGC
LOC_Os01g70430
Os.28544.1.S1_at--599--4911Chr01:41121087..41121111 (25 bp)
GCTTCTGTTTGAGCTGTTCACATTT
LOC_Os01g70430
Os.28544.1.S1_at--1134--8891Chr01:41121078..41121102 (25 bp)
TGAGCTGTTCACATTTCTTCCTTTT
LOC_Os01g70430
Os.28544.1.S1_at--352--10551Chr01:41121064..41121088 (25 bp)
TTCTTCCTTTTCTGGCCCAGGATTA
LOC_Os01g70430
Os.28544.1.S1_at--7--3931Chr01:41121053..41121077 (25 bp)
CTGGCCCAGGATTAGTACATTTGCT
LOC_Os01g70430
Os.28544.1.S1_at--809--2071Chr01:41121037..41121061 (25 bp)
ACATTTGCTGTATGGCTTTTCGCTA
LOC_Os01g70430
Os.28544.1.S1_at--1133--10291Chr01:41121020..41121044 (25 bp)
TTTCGCTAGGCCGTTTGGTACATAG
LOC_Os01g70430
Os.28544.1.S1_at--98--4231Chr01:41121010..41121034 (25 bp)
CCGTTTGGTACATAGATTAGGCTGT
LOC_Os01g70430
Os.28544.1.S1_at--1050--10091Chr01:41120993..41121017 (25 bp)
TAGGCTGTATCTAGCTTCTTGTTCC
LOC_Os01g70430
Os.28544.1.S1_at--1103--6892Chr04:35171119..35171214 (25 bp)
GTATCTAGCTTCTTGTTCCAGAAAA
LOC_Os04g59510
Os.28544.1.S1_at--406--6691Chr01:41120973..41120997 (25 bp)
GTTCCAGAAAAAGGATCAGTGTTTC
NONE
Target Sequence 
AGTTGGTGCTAGCTTCTGTTTGAGCTGTTCACATTTCTTCCTTTTCTGGCCCAGGATTAGTACATTTGCTGTATGGCTTT
TCGCTAGGCCGTTTGGTACATAGATTAGGCTGTATCTAGCTTCTTGTTCCAGAAAAAGGATCAGTGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis