Browse Element(s) Details


Os.5458.1.A1_at

Description gb:AK120760.1
DB_XREF= gi:37990383
TID=Os.5458.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.5458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0052O12.19 (OSJNBa0052O12.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007F18, full insert sequence.
FL= gb:AK120760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7047011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70410Os.16047.1.S1_at11/111+41113087..41115739Protein kinase domain containing protein, expressed
LOC_Os01g70420NANA1+41117049..41119258hypothetical protein
LOC_Os01g70430Os.28544.2.S1_x_at11/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70430Os.28544.1.S1_at10/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70440Os.34543.1.S1_at11/111+41124729..41125358expressed protein
LOC_Os01g70450NANA1+41129495..41131500hypothetical protein
LOC_Os01g70460Os.15295.3.S1_x_at11/111+41134008..41135229expressed protein
LOC_Os01g70470Os.5458.1.A1_at11/111+41139395..41140977expressed protein
LOC_Os01g70470Os.9623.2.S1_x_at1/111+41139395..41140977expressed protein
LOC_Os01g70480Os.32749.1.S1_at11/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.32749.2.S1_x_at10/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.14525.1.S1_at1/111+41149129..41150671hypothetical protein
LOC_Os01g70490Os.17158.1.S1_at10/111+41152561..41157146Potassium transporter 5, putative, expressed
LOC_Os01g70500Os.31293.1.S1_at10/111+41160454..41161710expressed protein
LOC_Os01g70509NANA1+41163696..41164196NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5458.1.A1_at--1044--7591Chr01:41140456..41140480 (25 bp)
GGGAACGTAAAATCCTCAATCTTGT
LOC_Os01g70470
Os.5458.1.A1_at--624--9731Chr01:41140471..41140495 (25 bp)
TCAATCTTGTACAGTTTTCGCCGGC
LOC_Os01g70470
Os.5458.1.A1_at--676--4211Chr01:41140495..41140519 (25 bp)
CCGCGTTCGCAGTCACCATGGTGAA
LOC_Os01g70470
Os.5458.1.A1_at--404--6071Chr01:41140590..41140614 (25 bp)
GAGTTTAGAAACGATCGCCCGATGC
LOC_Os01g70470
Os.5458.1.A1_at--803--531Chr01:41140603..41140627 (25 bp)
ATCGCCCGATGCACAGGAGGATGAT
LOC_Os01g70470
Os.5458.1.A1_at--395--7871Chr01:41140695..41140719 (25 bp)
GGTTTCTGGATCTCAAGTCTTGTGT
LOC_Os01g70470
Os.5458.1.A1_at--861--10791Chr01:41140769..41140793 (25 bp)
TTGTTCTTGTCCATGGTGAGAGAGA
LOC_Os01g70470
Os.5458.1.A1_at--188--1091Chr01:41140797..41140821 (25 bp)
AGGGCTTGCTTGAGCCATCACCATA
LOC_Os01g70470
Os.5458.1.A1_at--943--8911Chr01:41140807..41140831 (25 bp)
TGAGCCATCACCATACTACTAGTGC
LOC_Os01g70470
Os.5458.1.A1_at--115--3571Chr01:41140818..41140842 (25 bp)
CATACTACTAGTGCTACTCTACTAC
LOC_Os01g70470
Os.5458.1.A1_at--89--8071Chr01:41140926..41140950 (25 bp)
GGAGCTGTACCATGTAATCGGTTCA
LOC_Os01g70470
Target Sequence 
GGGAACGTAAAATCCTCAATCTTGTACAGTTTTCGCCGGCCGCGTTCGCAGTCACCATGGTGAAGTATATAAAGTAATTT
TTAGTACGGTTTTATTAACAGCAGATAGTAGGGAGGTTAATTAAGGAAAAAAAGGAGTTTAGAAACGATCGCCCGATGCA
CAGGAGGATGATCAAACCAACNACGGAGGAGGAGAGGATTTTTAATCAATTATTGTTCTTCTTTTTTTTTTACTGAATTG
GTTTCTGGATCTCAAGTCTTGTGTTCGTTGAGATGGAAGAGTCAGGTCAGGTGAGGTGTTTTGTAGATATATGTTGTTCT
TGTCCATGGTGAGAGAGATAAAGGGCTTGCTTGAGCCATCACCATACTACTAGTGCTACTCTACTACTGCCATGTAAAAA
GAAAAATCCATGGCTGTACTTGTAAAGAAGATGTTTGTGTACATAAACATGATGATGATGATGATGATATGGAGCTGTAC
CATGTAATCGGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5458.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis