Browse Element(s) Details


Os.34543.1.S1_at

Description gb:AK070978.1
DB_XREF= gi:32981001
TID=Os.34543.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34543 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative anther-specific protein (OSJNBa0052O12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073G24, full insert sequence.
FL= gb:AK070978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7044011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70380Os.9796.1.S1_at11/111+41101347..41105453Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70390Os.20144.3.S1_at9/111+41107291..41111719expressed protein
LOC_Os01g70400Os.20144.1.S1_a_at11/111+41111973..41113613expressed protein
LOC_Os01g70410Os.16047.1.S1_at11/111+41113087..41115739Protein kinase domain containing protein, expressed
LOC_Os01g70420NANA1+41117049..41119258hypothetical protein
LOC_Os01g70430Os.28544.2.S1_x_at11/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70430Os.28544.1.S1_at10/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70440Os.34543.1.S1_at11/111+41124729..41125358expressed protein
LOC_Os01g70450NANA1+41129495..41131500hypothetical protein
LOC_Os01g70460Os.15295.3.S1_x_at11/111+41134008..41135229expressed protein
LOC_Os01g70470Os.5458.1.A1_at11/111+41139395..41140977expressed protein
LOC_Os01g70470Os.9623.2.S1_x_at1/111+41139395..41140977expressed protein
LOC_Os01g70480Os.32749.1.S1_at11/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.32749.2.S1_x_at10/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.14525.1.S1_at1/111+41149129..41150671hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34543.1.S1_at--33--3351Chr01:41125299..41125323 (25 bp)
CACGGCGCGTGAGCTTGCAGAGACA
LOC_Os01g70440
Os.34543.1.S1_at--955--7291Chr01:41125143..41125167 (25 bp)
GTGCGGTAGCAAGGTGACCTCCTGC
LOC_Os01g70440
Os.34543.1.S1_at--617--491Chr01:41125052..41125076 (25 bp)
ATCGGCTGCACCAGCGACGTCTTGT
LOC_Os01g70440
Os.34543.1.S1_at--794--4351Chr01:41125009..41125033 (25 bp)
CCACCTCGCTCTGATTAAGTACTAA
LOC_Os01g70440
Os.34543.1.S1_at--164--9851Chr01:41124956..41124980 (25 bp)
TAAATCGCACCTACGTATGCCACAT
LOC_Os01g70440
Os.34543.1.S1_at--588--4371Chr01:41124937..41124961 (25 bp)
CCACATGTGGACTCGCTTGACTAAT
LOC_Os01g70440
Os.34543.1.S1_at--444--2251Chr01:41124911..41124935 (25 bp)
AAATACTGCCATGCGAATGCGATTA
LOC_Os01g70440
Os.34543.1.S1_at--985--8731Chr01:41124865..41124889 (25 bp)
TGTAAGAACTCATGGCTCTCTCTGT
LOC_Os01g70440
Os.34543.1.S1_at--46--7291Chr01:41124842..41124866 (25 bp)
GTGCCATGCCTGTACTGCATTGAAA
LOC_Os01g70440
Os.34543.1.S1_at--1098--3051Chr01:41124815..41124839 (25 bp)
AATCTGCATGCAGCCATGAACTGAT
LOC_Os01g70440
Os.34543.1.S1_at--146--331Chr01:41124790..41124814 (25 bp)
ATACAAATACGACCATGTTACCTGT
LOC_Os01g70440
Target Sequence 
CACGGCGCGTGAGCTTGCAGAGACAGCAATGGTGAGAGTTGGTGCCGCCGCGGCGGTGCTCGTGCTGGCGGCGGCGGCGG
CGGCCATGGCCGCCGAGCCGCCCACCGATGACGGCGCGGTCCGGGTGGCGGCGGGGCTGACGAAGTGCGTGTCCGGGTGC
GGTAGCAAGGTGACCTCCTGCTTGCTCGGCTGCTACGGCGGCGGCGGCGGCGCCGCCGCCGCCGCGACGGCGATGCCGTT
CTGCGTCATCGGCTGCACCAGCGACGTCTTGTCCTGCGCCACCGGCTGCTCCACCTCGCTCTGATTAAGTACTAATGAAG
TAATTAACCGCGCTAATTAATAATAAATCGCACCTACGTATGCCACATGTGGACTCGCTTGACTAATTAAATACTGCCAT
GCGAATGCGATTAGTGGATTATGAAAAGAGGAAATGTAAGAACTCATGGCTCTCTCTGTGCCATGCCTGTACTGCATTGA
AATGAATCTGCATGCAGCCATGAACTGATATACAAATACGACCATGTTACCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis