Browse Element(s) Details


Os.16047.1.S1_at

Description gb:CR285058
DB_XREF= gi:44671624
DB_XREF=CR285058
CLONE=y762c04p3
TID=Os.16047.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16047 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serinethreonine protein kinase (OSJNBa0052O12.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7041011/11Protein kinase domain containing protein, expressed
LOC_Os08g271701/11calmodulin-binding protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70360Os.42735.1.S1_at11/111+41086484..41090638Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_s_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70380Os.9796.1.S1_at11/111+41101347..41105453Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70390Os.20144.3.S1_at9/111+41107291..41111719expressed protein
LOC_Os01g70400Os.20144.1.S1_a_at11/111+41111973..41113613expressed protein
LOC_Os01g70410Os.16047.1.S1_at11/111+41113087..41115739Protein kinase domain containing protein, expressed
LOC_Os01g70420NANA1+41117049..41119258hypothetical protein
LOC_Os01g70430Os.28544.2.S1_x_at11/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70430Os.28544.1.S1_at10/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70440Os.34543.1.S1_at11/111+41124729..41125358expressed protein
LOC_Os01g70450NANA1+41129495..41131500hypothetical protein
LOC_Os01g70460Os.15295.3.S1_x_at11/111+41134008..41135229expressed protein
LOC_Os01g70470Os.5458.1.A1_at11/111+41139395..41140977expressed protein
LOC_Os01g70470Os.9623.2.S1_x_at1/111+41139395..41140977expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16047.1.S1_at--1147--7691Chr01:41114265..41114289 (25 bp)
GGTGTTTTCCTTGTGGAGTTGCTCA
LOC_Os01g70410
Os.16047.1.S1_at--730--5171Chr01:41114237..41114261 (25 bp)
GCAAGAGGGCTCTGTCTGATCAAAA
LOC_Os01g70410
Os.16047.1.S1_at--205--5231Chr01:41113981..41114005 (25 bp)
GAATTTCTGCGGTTGACATCGTGGT
LOC_Os01g70410
Os.16047.1.S1_at--1056--10751Chr01:41113969..41113993 (25 bp)
TTGACATCGTGGTGCGTGAACCCGA
LOC_Os01g70410
Os.16047.1.S1_at--951--531Chr01:41113935..41113959 (25 bp)
ATCGCCCATCGATGAACTTGGTGGA
LOC_Os01g70410
Os.16047.1.S1_at--415--6171Chr01:41113877..41113901 (25 bp)
GAGGATGACCACAATCATGCCAGAA
LOC_Os01g70410
Os.16047.1.S1_at--1072--10071Chr01:41113833..41113857 (25 bp)
TAGGTAGTCAGCTCTTCACAACATC
LOC_Os01g70410
Os.16047.1.S1_at--216--10011Chr01:41113793..41113817 (25 bp)
TAGCTAGTTTCCTCTCATCATCAGA
LOC_Os01g70410
Os.16047.1.S1_at--335--10012Chr08:16460990..16461029 (24 bp)
TAGCAATTCCCTTTCCATTTATTAT
LOC_Os08g27170
Os.16047.1.S1_at--445--3771Chr01:41113730..41113754 (25 bp)
CTCTCTCTTTTCTTTGGTCTTCATA
LOC_Os01g70410
Os.16047.1.S1_at--352--2151Chr01:41113670..41113694 (25 bp)
ACAGCTGTGAGGTTCCCTTTATTCC
LOC_Os01g70410
Target Sequence 
GGTGTTTTCCTTGTGGAGTTGCTCAGTGGCAAGAGGGCTCTGTCTGATCAAAACATCATTCGATGGGTGCAGAACTTCCA
ACAATCAAGTGATATCTCTGCAATTGCAGATANCNGAATGNCCAGTGCCTATACCTCAGAAGGCATGAGAGAATTTCTGC
GGTTGACATCGTGGTGCGTGAACCCGACGAGCGAGCATCGCCCATCGATGAACTTGGTGGAGGCGGAGATAAACCGAATT
CGCGAGCAAGAGATGAGGATGACCACAATCATGCCAGAANGCACACCAACTGTGACTCTAGGTAGTCAGCTCTTCACAAC
ATCAGGTTGAAGAAGAACTAGCTAGTTTCCTCTCATCATCAGAGTTATAGACTAGCAATTCCCTTTCCATTTATTATTTC
TCTCTCTTTTCTTTGGTCTTCATAGTGATTCAGCTGTAACTCAAGTGTACAAAAANGGAACAGCTGTGAGGTTCCCTTTA
TTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis