Browse Element(s) Details


Os.9623.2.S1_x_at

Description gb:AK062950.1
DB_XREF= gi:32972968
TID=Os.9623.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-C07, full insert sequence.
FL= gb:AK111825.1 gb:AK062950.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g704701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70410Os.16047.1.S1_at11/111+41113087..41115739Protein kinase domain containing protein, expressed
LOC_Os01g70420NANA1+41117049..41119258hypothetical protein
LOC_Os01g70430Os.28544.2.S1_x_at11/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70430Os.28544.1.S1_at10/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70440Os.34543.1.S1_at11/111+41124729..41125358expressed protein
LOC_Os01g70450NANA1+41129495..41131500hypothetical protein
LOC_Os01g70460Os.15295.3.S1_x_at11/111+41134008..41135229expressed protein
LOC_Os01g70470Os.5458.1.A1_at11/111+41139395..41140977expressed protein
LOC_Os01g70470Os.9623.2.S1_x_at1/111+41139395..41140977expressed protein
LOC_Os01g70480Os.32749.1.S1_at11/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.32749.2.S1_x_at10/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.14525.1.S1_at1/111+41149129..41150671hypothetical protein
LOC_Os01g70490Os.17158.1.S1_at10/111+41152561..41157146Potassium transporter 5, putative, expressed
LOC_Os01g70500Os.31293.1.S1_at10/111+41160454..41161710expressed protein
LOC_Os01g70509NANA1+41163696..41164196NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9623.2.S1_x_at--135--71Chr02:15483541..15483565 (25 bp)
ATTGCTTCAGCTCATCCGCTCCAAT
NONE
Os.9623.2.S1_x_at--241--4211Chr02:15483556..15483580 (25 bp)
CCGCTCCAATCACCTAAATTTACAG
NONE
Os.9623.2.S1_x_at--58--2251Chr02:15483571..15483595 (25 bp)
AAATTTACAGAAGGCGACTTGGCAA
NONE
Os.9623.2.S1_x_at--35--6011Chr02:15483608..15483743 (25 bp)
GAGAGATAGATATAGGCGTCGAACT
NONE
Os.9623.2.S1_x_at--548--10171Chr01:41139739..41139759 (21 bp)
TATAGGCGTCGAACTCCGGCAGGGA
LOC_Os01g70470
Os.9623.2.S1_x_at--844--8011Chr02:15483783..15483807 (25 bp)
GGAGGATCCAGATCCACCCCTGCAG
NONE
Os.9623.2.S1_x_at--812--3431Chr02:15488597..15488621 (25 bp)
CAGTAGGATCTGTGAGTAGTTTGAC
NONE
Os.9623.2.S1_x_at--734--6331Chr02:15488642..15488666 (25 bp)
GATGCAGTCTCTTTTGTCTAATATA
NONE
Os.9623.2.S1_x_at--555--6811Chr02:15488692..15488716 (25 bp)
GTTTTATTTCTTTCATGTCAGCAAT
NONE
Os.9623.2.S1_x_at--122--5191Chr02:15488712..15488736 (25 bp)
GCAATGCATGTTTGCTAGCACTTAT
NONE
Os.9623.2.S1_x_at--569--4851Chr02:15488725..15488749 (25 bp)
GCTAGCACTTATTTTCTTGTTATCA
NONE
Target Sequence 
ATTGCTTCAGCTCATCCGCTCCAATCACCTAAATTTACAGAAGGCGACTTGGCAAGAGGATGCGGAGGAGAGATAGATAT
AGGCGTCGAACTCCGGCAGGGAGGCGACGGTGCTGTGCGCGCCTCGGCCGCGGAGGATCCAGATCCACCCCTGCAGCGCT
GACCTCATCCTCAGCCCTCCTCACTTCCTCCTCACCTCCAACACCACCAACAAGAACTCTTGGAAATCAACGGAATTCAG
TAGGATCTGTGAGTAGTTTGACTGTTGAATTAATGAATTGTAGATGCAGTCTCTTTTGTCTAATATAAGTAGCACATAAT
CCATATTTAGATGTTTTATTTCTTTCATGTCAGCAATGCATGTTTGCTAGCACTTATTTTCTTGTTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9623.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis