Browse Element(s) Details


Os.31293.1.S1_at

Description gb:AK107569.1
DB_XREF= gi:32992778
TID=Os.31293.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0052O12.23 (OSJNBa0052O12.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-D01, full insert sequence.
FL= gb:AK107569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7050010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70470Os.5458.1.A1_at11/111+41139395..41140977expressed protein
LOC_Os01g70470Os.9623.2.S1_x_at1/111+41139395..41140977expressed protein
LOC_Os01g70480Os.32749.1.S1_at11/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.32749.2.S1_x_at10/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.14525.1.S1_at1/111+41149129..41150671hypothetical protein
LOC_Os01g70490Os.17158.1.S1_at10/111+41152561..41157146Potassium transporter 5, putative, expressed
LOC_Os01g70500Os.31293.1.S1_at10/111+41160454..41161710expressed protein
LOC_Os01g70509NANA1+41163696..41164196NA
LOC_Os01g70520Os.26537.1.S1_a_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.2.S1_x_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.1.S1_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.51558.1.S1_x_at1/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70540OsAffx.8479.1.S1_at7/111+41178852..41184665retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g70550Os.15260.1.S1_s_at11/111+41185276..41188676expressed protein
LOC_Os01g70550Os.42729.1.S1_at3/111+41185276..41188676expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31293.1.S1_at--785--9111Chr01:41160934..41160958 (25 bp)
TGCGGGTCTCCAACTACTCGTCGGA
LOC_Os01g70500
Os.31293.1.S1_at--1146--9871Chr01:41160776..41160800 (25 bp)
TACATGACGGAATCCGCCCCGTGAT
LOC_Os01g70500
Os.31293.1.S1_at--1054--7371Chr01:41160756..41160780 (25 bp)
GTGATCGGTCGAACGTTCGTCCCGT
LOC_Os01g70500
Os.31293.1.S1_at--1132--4071Chr01:41160666..41160690 (25 bp)
CGAGCTCGATCACGCGGTGGCCCAT
LOC_Os01g70500
Os.31293.1.S1_at--317--4431Chr01:41160632..41160656 (25 bp)
GCCATGGCGCCATCGATCATGTACA
LOC_Os01g70500
Os.31293.1.S1_at--823--1871Chr01:41160604..41160628 (25 bp)
ACGAGTCATGTATACGGAGCTTGAA
LOC_Os01g70500
Os.31293.1.S1_at--936--8071Chr01:41160589..41160613 (25 bp)
GGAGCTTGAATTACATGGTGCGTAC
LOC_Os01g70500
Os.31293.1.S1_at--588--8611Chr01:41160574..41160598 (25 bp)
TGGTGCGTACGTAATGCGAAGATCT
LOC_Os01g70500
Os.31293.1.S1_at--990--4411Chr01:41160559..41160583 (25 bp)
GCGAAGATCTGAAGGGAGTCCCCAT
LOC_Os01g70500
Os.31293.1.S1_at--567--4331Chr01:41160538..41160562 (25 bp)
CCATGGTTTTGGTTGCTGCAGGGAC
LOC_Os01g70500
Os.31293.1.S1_at--938--10111NONE
TATGTCATCTCTCTCGTCTTAAAAA
NONE
Target Sequence 
TGCGGGTCTCCAACTACTCGTCGGAGGAGGAGGAGGACGGCGACTACGGCCACGCCGACGGCGGCGGCGGCGGCGAGGCC
GTGGACGACGAGGCGGAGGAGTTCATCAGGCGCTTCTACGAGCAGCTGCGCCGCCAGAACCACGTCGCGCTGCTCCCCTA
CATGACGGAATCCGCCCCGTGATCGGTCGAACGTTCGTCCCGTCCACGCCGCGCCGCGCCGCGTCGCGCCACGCGCGCCC
AGAGCACGAACGCCGGCGAGGCCGCGCGCGAGCTCGATCACGCGGTGGCCCATCGCCTCGCCGCCATGGCGCCATCGATC
ATGTACACATACGAGTCATGTATACGGAGCTTGAATTACATGGTGCGTACGTAATGCGAAGATCTGAAGGGAGTCCCCAT
GGTTTTGGTTGCTGCAGGGACAGATGTAAATCTTGTGCAAATCTTTGTGTATTTTGAGNTTATTTGTAATTTGTAATGAA
AAATATTATGTCATCTCTCTCGTCTTAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis