Browse Element(s) Details


Os.26537.1.S1_at

Description gb:AK070499.1
DB_XREF= gi:32980523
TID=Os.26537.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative beta-glucosidase (OSJNBa0052O12.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054O08, full insert sequence.
FL= gb:AK119221.1 gb:AK070499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7052011/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70480Os.32749.1.S1_at11/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.32749.2.S1_x_at10/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.14525.1.S1_at1/111+41149129..41150671hypothetical protein
LOC_Os01g70490Os.17158.1.S1_at10/111+41152561..41157146Potassium transporter 5, putative, expressed
LOC_Os01g70500Os.31293.1.S1_at10/111+41160454..41161710expressed protein
LOC_Os01g70509NANA1+41163696..41164196NA
LOC_Os01g70520Os.26537.1.S1_a_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.2.S1_x_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.1.S1_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.51558.1.S1_x_at1/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70540OsAffx.8479.1.S1_at7/111+41178852..41184665retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g70550Os.15260.1.S1_s_at11/111+41185276..41188676expressed protein
LOC_Os01g70550Os.42729.1.S1_at3/111+41185276..41188676expressed protein
LOC_Os01g70560Os.47972.1.S1_at11/111+41189635..41191216expressed protein
LOC_Os01g70570Os.35284.1.S1_s_at11/111+41191764..41195193phospholipid/glycerol acyltransferase family protein, putative, expressed
LOC_Os01g70580Os.52120.1.S1_x_at11/111+41195558..41198733Thiamin pyrophosphokinase, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26537.1.S1_at--1161--4071Chr01:41174820..41174844 (25 bp)
CGAGCTCAGCAATGAGTTGCATACA
LOC_Os01g70520
Os.26537.1.S1_at--883--6651Chr01:41174835..41174859 (25 bp)
GTTGCATACACCTGATTTGGCAGTA
LOC_Os01g70520
Os.26537.1.S1_at--524--6071Chr01:41174903..41174927 (25 bp)
GAGTTAAGCAGAGAGGAAGTCACCT
LOC_Os01g70520
Os.26537.1.S1_at--679--6191Chr01:41174915..41174939 (25 bp)
GAGGAAGTCACCTGGTCTGGCTCTC
LOC_Os01g70520
Os.26537.1.S1_at--804--3911Chr01:41174931..41174955 (25 bp)
CTGGCTCTCTGTCACACATATATTT
LOC_Os01g70520
Os.26537.1.S1_at--938--3571Chr01:41174947..41174971 (25 bp)
CATATATTTACTCAGGACTTGCTCC
LOC_Os01g70520
Os.26537.1.S1_at--963--7051Chr01:41175035..41175059 (25 bp)
GTAACCATCGTTTGGTATCTATACT
LOC_Os01g70520
Os.26537.1.S1_at--904--6111Chr01:41175097..41175121 (25 bp)
GAGTGATGAATTAGCCACCCACAAC
LOC_Os01g70520
Os.26537.1.S1_at--421--2211Chr01:41175117..41175141 (25 bp)
ACAACCACCAACTCCCTGATAAGTG
LOC_Os01g70520
Os.26537.1.S1_at--722--7252Chr08:21705927..21705950 (24 bp)
GTCCTTGTTGTCAGGGTGTATGTGA
NONE
Os.26537.1.S1_at--837--7711Chr01:41175157..41175181 (25 bp)
GGGTGTATGTGACTTCCAAATTAAC
LOC_Os01g70520
Target Sequence 
CGAGCTCAGCAATGAGTTGCATACACCTGATTTGGCAGTAACATTATAGCAAGAGTTAAAATTCTTGAAAGACATTGTAG
CAAGAGTTAAGCAGAGAGGAAGTCACCTGGTCTGGCTCTCTGTCACACATATATTTACTCAGGACTTGCTCCTGNACACG
AAATACAGATTATGTGGTATAAAANCAATGTCATCAAATATTATGAGATTTTTNTCGTAACCATCGTTTGGTATCTATAC
TCTATAGTACAATTTTAATAGATTCCAATGGTGGTGGTGAGTGATGAATTAGCCACCCACAACCACCAACTCCCTGATAA
GTGGGGTCCTTGTTGTCAGGGTGTATGTGACTTCCAAATTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis