Browse Element(s) Details


Os.52120.1.S1_x_at

Description gb:AK064797.1
DB_XREF= gi:32974815
TID=Os.52120.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-040-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000D02, full insert sequence.
FL= gb:AK064797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7058011/11Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70520Os.26537.1.S1_a_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.2.S1_x_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.1.S1_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.51558.1.S1_x_at1/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70540OsAffx.8479.1.S1_at7/111+41178852..41184665retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g70550Os.15260.1.S1_s_at11/111+41185276..41188676expressed protein
LOC_Os01g70550Os.42729.1.S1_at3/111+41185276..41188676expressed protein
LOC_Os01g70560Os.47972.1.S1_at11/111+41189635..41191216expressed protein
LOC_Os01g70570Os.35284.1.S1_s_at11/111+41191764..41195193phospholipid/glycerol acyltransferase family protein, putative, expressed
LOC_Os01g70580Os.52120.1.S1_x_at11/111+41195558..41198733Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g70590OsAffx.2448.1.S1_at10/111+41202224..41203138eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70600OsAffx.23990.1.S1_at11/111+41203986..41208030eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70600OsAffx.23990.2.S1_x_at2/111+41203986..41208030eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70610OsAffx.23990.2.S1_at11/111+41208631..41208948hypothetical protein
LOC_Os01g70610OsAffx.23990.2.S1_x_at11/111+41208631..41208948hypothetical protein
LOC_Os01g70620OsAffx.23991.1.S1_at11/111+41210028..41210252hypothetical protein
LOC_Os01g70630OsAffx.30397.1.S1_x_at9/111+41211415..41218072hypothetical protein
LOC_Os01g70630OsAffx.30397.3.S1_x_at8/111+41211415..41218072hypothetical protein
LOC_Os01g70630OsAffx.30397.2.S1_at5/111+41211415..41218072hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006772biological_processthiamin metabolism
GO:0004788molecular_functionthiamin diphosphokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52120.1.S1_x_at--113--2271Chr01:41196306..41196330 (25 bp)
AAATCCACCTGGCTCTGAAGAGTCT
LOC_Os01g70580
Os.52120.1.S1_x_at--745--10211Chr01:41196179..41196203 (25 bp)
TATTCTTGTTCTTGGTGCACTTGGA
LOC_Os01g70580
Os.52120.1.S1_x_at--883--371Chr01:41196127..41196151 (25 bp)
ATCAACGTGTTATATCGCTTCTCAA
LOC_Os01g70580
Os.52120.1.S1_x_at--174--1011Chr01:41196097..41196121 (25 bp)
AGGATTGTCCTCCTGTCTGATGACT
LOC_Os01g70580
Os.52120.1.S1_x_at--272--8871Chr01:41196080..41196104 (25 bp)
TGATGACTGCTCAATCTTTCTGCTC
LOC_Os01g70580
Os.52120.1.S1_x_at--550--1391Chr01:41196051..41196075 (25 bp)
AGACGCACAGCCACGAGATCCATAT
LOC_Os01g70580
Os.52120.1.S1_x_at--1087--5871Chr01:41196025..41196049 (25 bp)
GAGCGATCAATCGAGGGTCCTCATT
LOC_Os01g70580
Os.52120.1.S1_x_at--899--10011Chr01:41195840..41195864 (25 bp)
TAGCATGAGCTACGGTGGACTGATA
LOC_Os01g70580
Os.52120.1.S1_x_at--9--251Chr01:41195749..41195773 (25 bp)
ATATCACTCCGGAACTGAGCTTTAA
LOC_Os01g70580
Os.52120.1.S1_x_at--1141--7851Chr01:41195610..41195634 (25 bp)
GGTATCCATATGTGTAAGCCTCTTG
LOC_Os01g70580
Os.52120.1.S1_x_at--95--2671Chr01:41195595..41195619 (25 bp)
AAGCCTCTTGGACATGCATCCATTA
LOC_Os01g70580
Target Sequence 
AAATCCACCTGGCTCTGAAGAGTCTAATCTGTATATTCTTGTTCTTGGTGCACTTGGAGGAAGGTTCGATCATGAGATGG
GGAACATCAACGTGTTATATCGCTTCTCAAANATCAGGATTGTCCTCCTGTCTGATGACTGCTCAATCTTTCTGCTCCCA
AAGACGCACAGCCACGAGATCCATATCGAGCGATCAATCGAGGGTCCTCATTGTGGATTGATTCCAATGGGNTCACCATC
GGCTAGCACTACCACCACAGGGCTCCGGTGGAATTTAGATAATACTAGCATGAGCTACGGTGGACTGATAAGCACATCTA
ACATCGTGGAAGAGGAAACAGTTAGNATCACTTCAGATTCTGATCTGATTTGGACAATATCACTCCGGAACTGAGCTTTA
AATTACCCATAAATGTATCTTGATCCAAATTTTGGCTCCTTAGTATAGCATGGATGGGCTACATTTTTGTAACTTAGATT
TTTTTTTCACTGATCTACTGTTAGTAAACAGGAAAGGTATCCATATGTGTAAGCCTCTTGGACATGCATCCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52120.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis