Browse Element(s) Details


OsAffx.23990.2.S1_x_at

Description gb:NM_190025.1
DB_XREF= gi:34907133
GEN=P0506E04.18
TID=OsAffx.23990.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0506E04.18 (P0506E04.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7061011/11hypothetical protein
LOC_Os01g706002/11eukaryotic translation initiation factor 2B family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70540OsAffx.8479.1.S1_at7/111+41178852..41184665retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g70550Os.15260.1.S1_s_at11/111+41185276..41188676expressed protein
LOC_Os01g70550Os.42729.1.S1_at3/111+41185276..41188676expressed protein
LOC_Os01g70560Os.47972.1.S1_at11/111+41189635..41191216expressed protein
LOC_Os01g70570Os.35284.1.S1_s_at11/111+41191764..41195193phospholipid/glycerol acyltransferase family protein, putative, expressed
LOC_Os01g70580Os.52120.1.S1_x_at11/111+41195558..41198733Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g70590OsAffx.2448.1.S1_at10/111+41202224..41203138eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70600OsAffx.23990.1.S1_at11/111+41203986..41208030eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70600OsAffx.23990.2.S1_x_at2/111+41203986..41208030eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70610OsAffx.23990.2.S1_at11/111+41208631..41208948hypothetical protein
LOC_Os01g70610OsAffx.23990.2.S1_x_at11/111+41208631..41208948hypothetical protein
LOC_Os01g70620OsAffx.23991.1.S1_at11/111+41210028..41210252hypothetical protein
LOC_Os01g70630OsAffx.30397.1.S1_x_at9/111+41211415..41218072hypothetical protein
LOC_Os01g70630OsAffx.30397.3.S1_x_at8/111+41211415..41218072hypothetical protein
LOC_Os01g70630OsAffx.30397.2.S1_at5/111+41211415..41218072hypothetical protein
LOC_Os01g70640OsAffx.23992.1.S1_at4/111+41224502..41225345hypothetical protein
LOC_Os01g70650OsAffx.11805.1.S1_x_at11/111+41226270..41226695Subtilisin N-terminal Region family protein
LOC_Os01g70650OsAffx.11805.1.S1_at11/111+41226270..41226695Subtilisin N-terminal Region family protein
LOC_Os01g70660Os.31355.2.S1_x_at11/111+41229343..41234287potassium uptake protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23990.2.S1_x_at--973--5292Chr01:41208681..41208705 (25 bp)
GAAGGAAGGGCGATACAATGTCAGA
LOC_Os01g70610
OsAffx.23990.2.S1_x_at--141--1611Chr01:41208705..41208729 (25 bp)
AGCTGCGGTCGAGGTTGCTCTGACC
LOC_Os01g70610
OsAffx.23990.2.S1_x_at--205--5831Chr01:41208726..41208750 (25 bp)
GACCGGAGAGGTGTACAGGATCATC
LOC_Os01g70610
OsAffx.23990.2.S1_x_at--473--7433Chr01:41208736..41208760 (25 bp)
GTGTACAGGATCATCGACGGCGCGT
LOC_Os01g70610
OsAffx.23990.2.S1_x_at--545--4091Chr01:41208750..41208774 (25 bp)
CGACGGCGCGTCACACAAGTTGGAG
LOC_Os01g70610
OsAffx.23990.2.S1_x_at--1153--1931Chr01:41208752..41208776 (25 bp)
ACGGCGCGTCACACAAGTTGGAGTA
LOC_Os01g70610
OsAffx.23990.2.S1_x_at--538--8391Chr01:41208754..41208778 (25 bp)
GGCGCGTCACACAAGTTGGAGTACA
LOC_Os01g70610
OsAffx.23990.2.S1_x_at--1029--4631Chr01:41208757..41208781 (25 bp)
GCGTCACACAAGTTGGAGTACAGAA
LOC_Os01g70610
OsAffx.23990.2.S1_x_at--419--1231Chr01:41208767..41208791 (25 bp)
AGTTGGAGTACAGAATCATCAGCGC
LOC_Os01g70610
OsAffx.23990.2.S1_x_at--697--3071Chr01:41208780..41208909 (25 bp)
AATCATCAGCGCAGGAGTTGTAGGG
LOC_Os01g70610
OsAffx.23990.2.S1_x_at--218--9671Chr01:41208785..41208914 (25 bp)
TCAGCGCAGGAGTTGTAGGGCTCAT
LOC_Os01g70610
Target Sequence 
GAAGGAAGGGCGATACAATGTCAGAGCTGCGGTCGAGGTTGCTCTGACCGGAGAGGTGTACAGGATCATCGACGGCGCGT
CACACAAGTTGGAGTACAGAATCATCAGCGCAGGAGTTGTAGGGCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23990.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis