Browse Element(s) Details


OsAffx.30397.2.S1_at

Description tigr:9638.m01101
TID=OsAffx.30397.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1217411/11hypothetical protein
LOC_Os07g022306/11hypothetical protein
LOC_Os01g706305/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12149Os.51348.1.S1_x_at2/1110+6525006..6525746hypothetical protein
LOC_Os10g12160Os.45173.5.S1_x_at4/1110+6528331..6536158retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12160Os.45173.1.S1_x_at1/1110+6528331..6536158retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12174OsAffx.30397.2.S1_at11/1110+6547699..6557457hypothetical protein
LOC_Os10g12174OsAffx.30397.1.S1_x_at10/1110+6547699..6557457hypothetical protein
LOC_Os10g12174OsAffx.30397.3.S1_x_at5/1110+6547699..6557457hypothetical protein
LOC_Os10g12190OsAffx.30398.1.S1_at11/1110+6559246..6562108Integral membrane protein DUF6 containing protein, expressed
LOC_Os10g12200OsAffx.30399.1.S1_at11/1110+6562608..6563951F-box domain containing protein
LOC_Os10g12220NANA10+6568233..6571191retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12226Os.10703.2.S1_x_at1/1110+6571508..6573997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12232NANA10+6574669..6577596retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12240NANA10+6581229..6584682retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30397.2.S1_at--913--2971Chr10:6557135..6557296 (25 bp)
AATGTGGCACGGCTGAACTGTTCAT
LOC_Os10g12174
OsAffx.30397.2.S1_at--1081--2552Chr07:707138..707162 (25 bp)
AACTGTTCATGTTTCACGCCGGTGA
LOC_Os07g02230
OsAffx.30397.2.S1_at--824--2331Chr10:6557096..6557120 (25 bp)
AAAGAGGAGCACTTTCCCTGTGCTT
LOC_Os10g12174
OsAffx.30397.2.S1_at--331--6293Chr07:708076..708100 (25 bp)
GATGTTCGCCGTGGGAGTATCTCAT
LOC_Os07g02230
OsAffx.30397.2.S1_at--990--1193Chr07:708091..708115 (25 bp)
AGTATCTCATGTCTCGCTGCTGAAT
LOC_Os07g02230
OsAffx.30397.2.S1_at--102--9091Chr10:6556137..6556161 (25 bp)
TGCTCAGCACTGCATGATACCTAGC
LOC_Os10g12174
OsAffx.30397.2.S1_at--527--6493Chr07:708136..708160 (25 bp)
GATACCTAGCATTGCGTACCTGTGG
LOC_Os07g02230
OsAffx.30397.2.S1_at--211--6991Chr10:6556107..6556131 (25 bp)
GTACCTGTGGGAGTTTAGCTCTGAT
LOC_Os10g12174
OsAffx.30397.2.S1_at--885--6113Chr07:709172..709195 (24 bp)
GAGGTCGTACTATGGTGCACCGACA
LOC_Os07g02230
OsAffx.30397.2.S1_at--818--9911Chr10:6555049..6555073 (25 bp)
TACTGTGTTGCTGTGTTTTGGTTCC
LOC_Os10g12174
OsAffx.30397.2.S1_at--1112--7493Chr07:709400..709422 (23 bp)
GTGGTGCGATCTTACAACTCTATGT
LOC_Os07g02230
Target Sequence 
AATGTGGCACGGCTGAACTGTTCATGTTTCACGCCGGTGAAAGAGGAGCACTTTCCCTGTGCTTGCTGCAAGGTTTTCTG
CTCCCTCGCCTTCTCCTCCTCGCCATTCGCTGTTCCTCTTCTCCTTCGTGGTGTAGCCGCGATGTTCGCCGTGGGAGTAT
CTCATGTCTCGCTGCTGAATGCCGCTGCTCAGCACTGCATGATACCTAGCATTGCGTACCTGTGGGAGTTTAGCTCTGAT
GCTAATGTTGAGCTTGATAGAGGTAGTTCTTCACGCTCTCACAAGGATCATGTTGAGGCTTTAAAGGCATCGTACCCGGG
GAGGTCGTACTATGGTGCACCGACATATGAGTGTTTGTACTGTGTTGCTGTGTTTTGGTTCCAGGAGAGGGTTAAAAGTC
TTTCAGCTATTTCAAAACGAAAAATAGTTTACAATTTGTGCTGCAAAAGTGGTGCGATCTTACAACTCTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30397.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis