Browse Element(s) Details


OsAffx.30399.1.S1_at

Description gb:NM_195367.1
DB_XREF= gi:37532093
TID=OsAffx.30399.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0003P07.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1220011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12174OsAffx.30397.2.S1_at11/1110+6547699..6557457hypothetical protein
LOC_Os10g12174OsAffx.30397.1.S1_x_at10/1110+6547699..6557457hypothetical protein
LOC_Os10g12174OsAffx.30397.3.S1_x_at5/1110+6547699..6557457hypothetical protein
LOC_Os10g12190OsAffx.30398.1.S1_at11/1110+6559246..6562108Integral membrane protein DUF6 containing protein, expressed
LOC_Os10g12200OsAffx.30399.1.S1_at11/1110+6562608..6563951F-box domain containing protein
LOC_Os10g12220NANA10+6568233..6571191retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12226Os.10703.2.S1_x_at1/1110+6571508..6573997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12232NANA10+6574669..6577596retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12240NANA10+6581229..6584682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12260NANA10+6588772..6590235retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30399.1.S1_at--91--10011Chr10:6563029..6563053 (25 bp)
TAGCAGTACGTTTTGACACGCCGGC
LOC_Os10g12200
OsAffx.30399.1.S1_at--728--1611Chr10:6562921..6562945 (25 bp)
AGCTGTGCCTTCTGGACGCAGGGAA
LOC_Os10g12200
OsAffx.30399.1.S1_at--1058--6491Chr10:6562888..6562912 (25 bp)
GATATGCCAGTTTTGTGCGGACGGT
LOC_Os10g12200
OsAffx.30399.1.S1_at--116--9111Chr10:6562873..6562897 (25 bp)
TGCGGACGGTTTTCGAGGCAAGCAC
LOC_Os10g12200
OsAffx.30399.1.S1_at--781--1071Chr10:6562835..6562859 (25 bp)
AGGGAATGTTCCGTCACGTCGACAC
LOC_Os10g12200
OsAffx.30399.1.S1_at--979--1891Chr10:6562820..6562844 (25 bp)
ACGTCGACACGGCTCAAGGTAAAAT
LOC_Os10g12200
OsAffx.30399.1.S1_at--732--2891Chr10:6562805..6562829 (25 bp)
AAGGTAAAATCTGCGGCCGACATCA
LOC_Os10g12200
OsAffx.30399.1.S1_at--579--3251Chr10:6562782..6562806 (25 bp)
CAACCTGCGTTGGTTCTGCGAGAAT
LOC_Os10g12200
OsAffx.30399.1.S1_at--1113--5951Chr10:6562763..6562787 (25 bp)
GAGAATAGTGGCATCCTCTTGTTCA
LOC_Os10g12200
OsAffx.30399.1.S1_at--259--9591Chr10:6562747..6562771 (25 bp)
TCTTGTTCACGCTCGGCAGAGGCAG
LOC_Os10g12200
OsAffx.30399.1.S1_at--583--551Chr10:6562717..6562741 (25 bp)
ATCCTGGAACCTTTGCAATGAGCCT
LOC_Os10g12200
Target Sequence 
TAGCAGTACGTTTTGACACGCCGGCGCCGGCGCAGGTGCGCATGCCGCCGGACGGCGTTCCCAACCCGCTCCAGCAGCTC
CGTCTGCTCAGCGTCACGCCCGATGGGAAGCTGTGCCTTCTGGACGCAGGGAATGGTGCAGGATATGCCAGTTTTGTGCG
GACGGTTTTCGAGGCAAGCACCGGAGAATGGGTGAGGGAATGTTCCGTCACGTCGACACGGCTCAAGGTAAAATCTGCGG
CCGACATCAACCTGCGTTGGTTCTGCGAGAATAGTGGCATCCTCTTGTTCACGCTCGGCAGAGGCAGCAGTAATCCTGGA
ACCTTTGCAATGAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis