Browse Element(s) Details


OsAffx.30397.3.S1_x_at

Description gb:NM_194117.1
DB_XREF= gi:34915271
GEN=OJ1118_G09.20
TID=OsAffx.30397.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) similar to replication protein (OJ1118_G09.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0223011/11hypothetical protein
LOC_Os01g706308/11hypothetical protein
LOC_Os10g121745/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02140OsAffx.16039.1.S1_at11/117+683770..685521Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02150OsAffx.28229.1.S1_x_at8/117+686363..6868423'-5' exonuclease family protein
LOC_Os07g02170OsAffx.28231.1.S1_x_at11/117+690169..6909123'-5' exonuclease domain-containing protein, putative
LOC_Os07g02170OsAffx.28231.1.S1_at11/117+690169..6909123'-5' exonuclease domain-containing protein, putative
LOC_Os07g02180NANA7+691715..6932053'-5' exonuclease family protein, expressed
LOC_Os07g02190OsAffx.25643.1.S1_at1/117+697018..697329hypothetical protein
LOC_Os07g02200Os.7393.1.S1_at11/117+698177..699125Plastocyanin-like domain containing protein, expressed
LOC_Os07g02210Os.5400.1.S1_at11/117+701316..703801Eukaryotic translation initiation factor 5A-1/2, putative, expressed
LOC_Os07g02230OsAffx.30397.3.S1_x_at11/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.28232.1.A1_at10/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.1.S1_x_at9/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.2.S1_at6/117+705311..716673hypothetical protein
LOC_Os07g02240OsAffx.16042.1.S1_at11/117+716901..718126transcription factor X1, putative
LOC_Os07g02250Os.30485.1.S1_at11/117+721178..724795expressed protein
LOC_Os07g02260OsAffx.8843.1.S1_at11/117+724976..725668expressed protein
LOC_Os07g02270OsAffx.16043.1.S1_at11/117+734314..737018hypothetical protein
LOC_Os07g02280OsAffx.21080.1.S1_at11/117+741230..743134pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30397.3.S1_x_at--75--3471Chr07:715931..715955 (25 bp)
CAGTGTGATTTCCATGAGTGTTCTT
LOC_Os07g02230
OsAffx.30397.3.S1_x_at--8--8192Chr07:715958..715982 (25 bp)
GGAACCTCTTATGCTAATGTCCCCA
LOC_Os07g02230
OsAffx.30397.3.S1_x_at--631--1253Chr07:715991..716015 (25 bp)
AGATTCTCCTGGTTCTTCAGCTATC
LOC_Os07g02230
OsAffx.30397.3.S1_x_at--889--10512Chr07:716006..716030 (25 bp)
TTCAGCTATCATGTCACCTGGACCA
LOC_Os07g02230
OsAffx.30397.3.S1_x_at--980--8532Chr07:716024..716048 (25 bp)
TGGACCAAGCACTTCCATCATGTCA
LOC_Os07g02230
OsAffx.30397.3.S1_x_at--808--2093Chr07:716058..716082 (25 bp)
ACATCTGAGATTGCCATTTCCTCAC
LOC_Os07g02230
OsAffx.30397.3.S1_x_at--363--9851Chr07:716093..716117 (25 bp)
TACAATAGCTTCTCCAGTGACCAGG
LOC_Os07g02230
OsAffx.30397.3.S1_x_at--105--1551Chr07:716142..716166 (25 bp)
AGCATACTTTCTTTGGCTACCACAG
LOC_Os07g02230
OsAffx.30397.3.S1_x_at--1088--5173Chr07:716172..716196 (25 bp)
GCAAGTCATGTTGATCCACTGTCTC
LOC_Os07g02230
OsAffx.30397.3.S1_x_at--989--193Chr07:716342..716366 (25 bp)
ATTTCTGATGACATCACGCTGCCAC
LOC_Os07g02230
OsAffx.30397.3.S1_x_at--782--433Chr07:716374..716398 (25 bp)
ATCTATTCCAAACAGCTCAACCAAG
LOC_Os07g02230
Target Sequence 
CAGTGTGATTTCCATGAGTGTTCTTGGGGAACCTCTTATGCTAATGTCCCCAGGACCAGCAGATTCTCCTGGTTCTTCAG
CTATCATGTCACCTGGACCAAGCACTTCCATCATGTCACCCACAAGAACATCTGAGATTGCCATTTCCTCACCTCCATTA
GCTACAATAGCTTCTCCAGTGACCAGGCGTGCAGCACCTCAAACACCAACTAGCATACTTTCTTTGGCTACCACAGAGCA
AGCAAGTCATGTTGATCCACTGTCTCCACCCATGACTCAAGCAGTGGCCTCTGAGAGTACAGAAATGAAACAGAAGGCTA
TTATTATTTCTGATGACATCACGCTGCCACTGGCTGCATCTATTCCAAACAGCTCAACCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30397.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis