Browse Element(s) Details


OsAffx.28229.1.S1_x_at

Description gb:NM_194109.1
DB_XREF= gi:34915255
GEN=OJ1118_G09.10
TID=OsAffx.28229.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome1, P0671D01.4 (OJ1118_G09.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g021508/113'-5' exonuclease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02090Os.25566.1.S1_at11/117+657076..661498calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g02100Os.32504.2.S1_at11/117+662917..665400Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02100Os.32504.1.S1_at11/117+662917..665400Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02110OsAffx.28228.1.S1_x_at11/117+666043..667680expressed protein
LOC_Os07g02120NANA7+671472..673066Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02130NANA7+675800..677206flavin-containing monooxygenase family protein, putative
LOC_Os07g02140OsAffx.16039.1.S1_at11/117+683770..685521Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02150OsAffx.28229.1.S1_x_at8/117+686363..6868423'-5' exonuclease family protein
LOC_Os07g02170OsAffx.28231.1.S1_x_at11/117+690169..6909123'-5' exonuclease domain-containing protein, putative
LOC_Os07g02170OsAffx.28231.1.S1_at11/117+690169..6909123'-5' exonuclease domain-containing protein, putative
LOC_Os07g02180NANA7+691715..6932053'-5' exonuclease family protein, expressed
LOC_Os07g02190OsAffx.25643.1.S1_at1/117+697018..697329hypothetical protein
LOC_Os07g02200Os.7393.1.S1_at11/117+698177..699125Plastocyanin-like domain containing protein, expressed
LOC_Os07g02210Os.5400.1.S1_at11/117+701316..703801Eukaryotic translation initiation factor 5A-1/2, putative, expressed
LOC_Os07g02230OsAffx.30397.3.S1_x_at11/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.28232.1.A1_at10/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.1.S1_x_at9/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.2.S1_at6/117+705311..716673hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
GO:0008408molecular_function3'-5' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28229.1.S1_x_at--419--4111Chr07:686966..686990 (25 bp)
CGCACGCACGACGAGTACGTGGTGC
NONE
OsAffx.28229.1.S1_x_at--222--1871Chr07:686956..686980 (25 bp)
ACGAGTACGTGGTGCGCGTCGGCGG
NONE
OsAffx.28229.1.S1_x_at--805--1051Chr07:686926..686950 (25 bp)
AGGTGGTCGCCACGGTGACCGCGCA
NONE
OsAffx.28229.1.S1_x_at--293--7791Chr07:686742..686766 (25 bp)
GGTGCCTGGTGTTCCAGCTCGCGCA
LOC_Os07g02150
OsAffx.28229.1.S1_x_at--351--1871Chr07:686673..686697 (25 bp)
ACGAGCGCGTCGTGTTCGTCGGCTA
LOC_Os07g02150
OsAffx.28229.1.S1_x_at--453--9931Chr07:686650..686674 (25 bp)
TACGGCGTGCGGTCCGACTGCCGCA
LOC_Os07g02150
OsAffx.28229.1.S1_x_at--737--9291Chr07:686638..686662 (25 bp)
TCCGACTGCCGCAAGCTGGAGGAAC
LOC_Os07g02150
OsAffx.28229.1.S1_x_at--239--5111Chr07:686592..686616 (25 bp)
GCACGGTGGAGCTGCGGTCGCTGGC
LOC_Os07g02150
OsAffx.28229.1.S1_x_at--405--8171Chr07:686559..686583 (25 bp)
GGAACACGTCGATGCAGCGCATGGC
LOC_Os07g02150
OsAffx.28229.1.S1_x_at--1000--7631Chr07:686472..686496 (25 bp)
GGGACGCGCGCAGGCTGAGCAAGGA
LOC_Os07g02150
OsAffx.28229.1.S1_x_at--250--1491Chr07:686455..686479 (25 bp)
AGCAAGGAGCAGGTGCAGTACGCCT
LOC_Os07g02150
Target Sequence 
CGCACGCACGACGAGTACGTGGTGCGCGTCGGCGGCCGCCAGGTGGTCGCCACGGTGACCGCGCACGCGNNNGGNGNGCN
GTGGACGCCGCCGTTCCGCCGCGCCACGATCCGGCCGGGCACGCTGCAGCTGTGCGCGGGGCACCGGTGCCTGGTGTTCC
AGCTCGCGCACGCCGACGCCGCCGTCCCCGCCGCGCTCCGGCGGTTCCTGGCCGACGAGCGCGTCGTGTTCGTCGGCTAC
GGCGTGCGGTCCGACTGCCGCAAGCTGGAGGAACAGCACGGGCTGGAGGTGGCGCGCACGGTGGAGCTGCGGTCGCTGGC
CGGCATGGGGAACACGTCGATGCAGCGCATGGCGGAGGAGCACCTCGGGTGGGACGGGGTGACGACGAAGCCGAGGAAGG
TCGGGACGAGCAGGTGGGACGCGCGCAGGCTGAGCAAGGAGCAGGTGCAGTACGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28229.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis