Browse Element(s) Details


OsAffx.16039.1.S1_at

Description tigr:9635.m00120
TID=OsAffx.16039.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0214011/11Flavin-binding monooxygenase-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02090Os.25566.1.S1_at11/117+657076..661498calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g02100Os.32504.2.S1_at11/117+662917..665400Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02100Os.32504.1.S1_at11/117+662917..665400Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02110OsAffx.28228.1.S1_x_at11/117+666043..667680expressed protein
LOC_Os07g02120NANA7+671472..673066Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02130NANA7+675800..677206flavin-containing monooxygenase family protein, putative
LOC_Os07g02140OsAffx.16039.1.S1_at11/117+683770..685521Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02150OsAffx.28229.1.S1_x_at8/117+686363..6868423'-5' exonuclease family protein
LOC_Os07g02170OsAffx.28231.1.S1_x_at11/117+690169..6909123'-5' exonuclease domain-containing protein, putative
LOC_Os07g02170OsAffx.28231.1.S1_at11/117+690169..6909123'-5' exonuclease domain-containing protein, putative
LOC_Os07g02180NANA7+691715..6932053'-5' exonuclease family protein, expressed
LOC_Os07g02190OsAffx.25643.1.S1_at1/117+697018..697329hypothetical protein
LOC_Os07g02200Os.7393.1.S1_at11/117+698177..699125Plastocyanin-like domain containing protein, expressed
LOC_Os07g02210Os.5400.1.S1_at11/117+701316..703801Eukaryotic translation initiation factor 5A-1/2, putative, expressed
LOC_Os07g02230OsAffx.30397.3.S1_x_at11/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.28232.1.A1_at10/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.1.S1_x_at9/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.2.S1_at6/117+705311..716673hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16039.1.S1_at--175--9192Chr07:684955..684979 (25 bp)
TGCCGGCGCCATGGTTCTTCGAGGC
LOC_Os07g02140
OsAffx.16039.1.S1_at--1005--4651Chr07:685087..685111 (25 bp)
GCGTGCCGGTCAAGTACACGCACGA
LOC_Os07g02140
OsAffx.16039.1.S1_at--459--9451Chr07:685114..685241 (25 bp)
TCGGCGGCATCGAGCCTCAGAAGTA
LOC_Os07g02140
OsAffx.16039.1.S1_at--749--4451Chr07:685234..685254 (21 bp)
GCCTCAGAAGTACATCGAGTTCGGG
LOC_Os07g02140
OsAffx.16039.1.S1_at--470--7891Chr07:685268..685292 (25 bp)
GGTTCCCGCGCTACGAGGATTGGAA
LOC_Os07g02140
OsAffx.16039.1.S1_at--608--1071Chr07:685294..685318 (25 bp)
AGGGAGATGATCGTGTCCACCATCA
LOC_Os07g02140
OsAffx.16039.1.S1_at--1058--3891Chr07:685305..685329 (25 bp)
CGTGTCCACCATCAGTAGGAGGGAT
LOC_Os07g02140
OsAffx.16039.1.S1_at--746--2111Chr07:685337..685361 (25 bp)
ACATGGAGACATTTCGCGACCGCGT
LOC_Os07g02140
OsAffx.16039.1.S1_at--584--5791Chr07:685366..685390 (25 bp)
GACGACAGTGACCATGTCCGGCTCT
LOC_Os07g02140
OsAffx.16039.1.S1_at--209--8331Chr07:685385..685409 (25 bp)
GGCTCTGCCTCAAGAGCTGGCACTG
LOC_Os07g02140
OsAffx.16039.1.S1_at--891--371Chr07:685427..685451 (25 bp)
ATCAAGCCTCTCTTGCTGTTTCTGC
LOC_Os07g02140
Target Sequence 
TGCCGGCGCCATGGTTCTTCGAGGCGCAGGGGAAGTGGGTGGCGCAGGTGCTGTCCGGGAGGAGGACGCTGCCGCCGGTG
GAGGAGATGCTGCGCGCCGTCGACGAGCACTACCGCGCCAGGGCGGCCGCCGGCGTGCCGGTCAAGTACACGCACGAGCT
CGGCGGCATCGAGCCTCAGAAGTACATCGAGTTCGGGGAGAAGTATTGCGGGTTCCCGCGCTACGAGGATTGGAAGAGGG
AGATGATCGTGTCCACCATCAGTAGGAGGGATGACGACGACATGGAGACATTTCGCGACCGCGTCGACGACGACAGTGAC
CATGTCCGGCTCTGCCTCAAGAGCTGGCACTGCTCATCACCTGCTCGACATCAAGCCTCTCTTGCTGTTTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis