Browse Element(s) Details


OsAffx.28231.1.S1_at

Description gb:NM_194112.1
DB_XREF= gi:34915261
GEN=OJ1118_G09.13
TID=OsAffx.28231.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome2, At2g36110 (OJ1118_G09.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0217011/113'-5' exonuclease domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02100Os.32504.2.S1_at11/117+662917..665400Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02100Os.32504.1.S1_at11/117+662917..665400Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02110OsAffx.28228.1.S1_x_at11/117+666043..667680expressed protein
LOC_Os07g02120NANA7+671472..673066Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02130NANA7+675800..677206flavin-containing monooxygenase family protein, putative
LOC_Os07g02140OsAffx.16039.1.S1_at11/117+683770..685521Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02150OsAffx.28229.1.S1_x_at8/117+686363..6868423'-5' exonuclease family protein
LOC_Os07g02170OsAffx.28231.1.S1_x_at11/117+690169..6909123'-5' exonuclease domain-containing protein, putative
LOC_Os07g02170OsAffx.28231.1.S1_at11/117+690169..6909123'-5' exonuclease domain-containing protein, putative
LOC_Os07g02180NANA7+691715..6932053'-5' exonuclease family protein, expressed
LOC_Os07g02190OsAffx.25643.1.S1_at1/117+697018..697329hypothetical protein
LOC_Os07g02200Os.7393.1.S1_at11/117+698177..699125Plastocyanin-like domain containing protein, expressed
LOC_Os07g02210Os.5400.1.S1_at11/117+701316..703801Eukaryotic translation initiation factor 5A-1/2, putative, expressed
LOC_Os07g02230OsAffx.30397.3.S1_x_at11/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.28232.1.A1_at10/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.1.S1_x_at9/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.2.S1_at6/117+705311..716673hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
GO:0008408molecular_function3'-5' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28231.1.S1_at--319--4491Chr07:690695..690719 (25 bp)
GCCGGTGGGTGTTCTCCACGCGGTG
LOC_Os07g02170
OsAffx.28231.1.S1_at--1009--7471Chr07:690546..690570 (25 bp)
GTGGGCAGCCGGTGCCTCGTCTTCC
LOC_Os07g02170
OsAffx.28231.1.S1_at--288--9411Chr07:690530..690554 (25 bp)
TCGTCTTCCAGGTCGCTCAGGGCAA
LOC_Os07g02170
OsAffx.28231.1.S1_at--603--9211Chr07:690524..690548 (25 bp)
TCCAGGTCGCTCAGGGCAACGCCTT
LOC_Os07g02170
OsAffx.28231.1.S1_at--866--531Chr07:690438..690462 (25 bp)
ATCCGCTCCGACTGCCGGAAACTGG
LOC_Os07g02170
OsAffx.28231.1.S1_at--597--1731Chr07:690407..690431 (25 bp)
ACCATGGCCTTCATGTGGCGTGCAC
LOC_Os07g02170
OsAffx.28231.1.S1_at--1062--871Chr07:690404..690428 (25 bp)
ATGGCCTTCATGTGGCGTGCACGCG
LOC_Os07g02170
OsAffx.28231.1.S1_at--1069--10531Chr07:690398..690422 (25 bp)
TTCATGTGGCGTGCACGCGCGAGCT
LOC_Os07g02170
OsAffx.28231.1.S1_at--569--4251Chr07:690368..690392 (25 bp)
CCGTGACCGGCATGGGCAGCTCGTC
LOC_Os07g02170
OsAffx.28231.1.S1_at--790--3211Chr07:690250..690274 (25 bp)
CAAGAAGCAGGTGAAGTACGCGTGT
LOC_Os07g02170
OsAffx.28231.1.S1_at--296--5331Chr07:690238..690262 (25 bp)
GAAGTACGCGTGTGTCGACGCCTTC
LOC_Os07g02170
Target Sequence 
GCCGGTGGGTGTTCTCCACGCGGTGGCGCCACGGCCGCCGCCTCCGCTCCGGCGCCGGGCTCACCGTCGCAATGGGGGTG
CAGTGGACGCCGCCGTCCCGCGCGCTCGCCGGCGGCGCCGAGCCGCGGCCGGGCACGCTGCAGCTCTGCGTGGGCAGCCG
GTGCCTCGTCTTCCAGGTCGCTCAGGGCAACGCCTTCCCCGCCGCGCTCCGGCGGTTCCTCGCCGACGGCGGCGTGGCGG
CGTTCGTGGGCTACGGCATCCGCTCCGACTGCCGGAAACTGGCCGCTCACCATGGCCTTCATGTGGCGTGCACGCGCGAG
CTCCGCGCCGTGACCGGCATGGGCAGCTCGTCCATGGCGCGCATGGCGGAGGAGCTCCTCGGGCTCGCCGGAATCAAGAA
GCCGGCGGCGGTGGGCAGGAGCAGGTGGGACGCGCCGAAGCTGTCCAAGAAGCAGGTGAAGTACGCGTGTGTCGACGCCT
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis