Browse Element(s) Details


Os.25566.1.S1_at

Description gb:AK100372.1
DB_XREF= gi:32985581
TID=Os.25566.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs D25106(R3184),AU184634(R3184)~diphosphonucleotide phosphatase-like protein (OJ1123_C12.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084G21, full insert sequence.
FL= gb:AK062093.1 gb:AK073350.1 gb:AK100372.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0209011/11calcineurin-like phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02060Os.38985.1.S1_at11/117+628861..632615WRKY DNA binding domain containing protein, expressed
LOC_Os07g02070Os.47130.4.A1_x_at5/117+644519..646561retrotransposon protein, putative, unclassified
LOC_Os07g02080NANA7+655468..655809hypothetical protein
LOC_Os07g02090Os.25566.1.S1_at11/117+657076..661498calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g02100Os.32504.2.S1_at11/117+662917..665400Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02100Os.32504.1.S1_at11/117+662917..665400Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02110OsAffx.28228.1.S1_x_at11/117+666043..667680expressed protein
LOC_Os07g02120NANA7+671472..673066Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02130NANA7+675800..677206flavin-containing monooxygenase family protein, putative
LOC_Os07g02140OsAffx.16039.1.S1_at11/117+683770..685521Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02150OsAffx.28229.1.S1_x_at8/117+686363..6868423'-5' exonuclease family protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25566.1.S1_at--1049--5531Chr07:660946..660970 (25 bp)
GACACTAACGTACATCGGCAACCAT
LOC_Os07g02090
Os.25566.1.S1_at--612--111Chr07:661000..661024 (25 bp)
ATTCTCTGGGCAAGTATCTAATAAC
LOC_Os07g02090
Os.25566.1.S1_at--288--7411Chr07:661029..661053 (25 bp)
GTGTTCCTGAGGTGATCGATGATAC
LOC_Os07g02090
Os.25566.1.S1_at--600--1471Chr07:661073..661097 (25 bp)
AGCACCAAACTGAAAATCCCTCTGT
LOC_Os07g02090
Os.25566.1.S1_at--191--331Chr07:661088..661112 (25 bp)
ATCCCTCTGTTCTCCTTGGAAATTG
LOC_Os07g02090
Os.25566.1.S1_at--383--10271Chr07:661127..661151 (25 bp)
TTTGCACTGGTTCTGGGTTTCTCTC
LOC_Os07g02090
Os.25566.1.S1_at--288--5571Chr07:661174..661198 (25 bp)
GAAAGAAGCTGCACAGTGGACCCCA
LOC_Os07g02090
Os.25566.1.S1_at--301--8051Chr07:661210..661234 (25 bp)
GGAGACCTAAAATCACACACTGTAT
LOC_Os07g02090
Os.25566.1.S1_at--136--1551Chr07:661378..661402 (25 bp)
AGCATATCTGTTGCCGTGATTCTAC
LOC_Os07g02090
Os.25566.1.S1_at--75--5691Chr07:661426..661450 (25 bp)
GACATTACGTTCACATCAATTGGTT
LOC_Os07g02090
Os.25566.1.S1_at--1077--7491Chr07:661458..661478 (21 bp)
GTGGTTAACCTGTTCCATAACTGCA
LOC_Os07g02090
Target Sequence 
GACACTAACGTACATCGGCAACCATGATGGGCAAGTCCATGATATGGTGGAGATATTCTCTGGGCAAGTATCTAATAACA
ATGGTGTTCCTGAGGTGATCGATGATACAAAGCTCAGCACAGGGGTCAGCACCAAACTGAAAATCCCTCTGTTCTCCTTG
GAAATTGTAGGCAGCGTGATGTTTGCACTGGTTCTGGGTTTCTCTCTTGGATTTCTGATCAGAAGGAAGAAAGAAGCTGC
ACAGTGGACCCCAGTGAAGAACGAGGAGACCTAAAATCACACACTGTATCTAATGCAAATGCAAATGGTTTTTGATCAAC
AACCTGTTTATAGGATCGTGCCCCATTTCTTGGGGCTCTACAGTGTTGTACTATAGTGCATAGAGTATTGTAACATGTGC
TGTGTCAATCGTGGGCATTGTAGAGTTTGATCAGCATATCTGTTGCCGTGATTCTACGATACATAAAGGTTTCAATAAGT
GACATTACGTTCACATCAATTGGTTGGTATGAGTGGTTAACCTGTTCCATAACTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis