Browse Element(s) Details


OsAffx.21080.1.S1_at

Description tigr:9635.m00134
TID=OsAffx.21080.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0228011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02230OsAffx.30397.3.S1_x_at11/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.28232.1.A1_at10/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.1.S1_x_at9/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.2.S1_at6/117+705311..716673hypothetical protein
LOC_Os07g02240OsAffx.16042.1.S1_at11/117+716901..718126transcription factor X1, putative
LOC_Os07g02250Os.30485.1.S1_at11/117+721178..724795expressed protein
LOC_Os07g02260OsAffx.8843.1.S1_at11/117+724976..725668expressed protein
LOC_Os07g02270OsAffx.16043.1.S1_at11/117+734314..737018hypothetical protein
LOC_Os07g02280OsAffx.21080.1.S1_at11/117+741230..743134pentatricopeptide, putative, expressed
LOC_Os07g02290OsAffx.16045.1.S1_at11/117+747870..751388F-box domain containing protein
LOC_Os07g02300Os.27537.1.S1_at11/117+751972..761671TPR Domain containing protein, expressed
LOC_Os07g02300OsAffx.31868.1.S1_at2/117+751972..761671TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21080.1.S1_at--356--4651Chr07:742547..742571 (25 bp)
GCGTGCCGGCTTCACAAGAACATGG
LOC_Os07g02280
OsAffx.21080.1.S1_at--504--5691Chr07:742611..742635 (25 bp)
GACTTGCCAACTCCGGTATGTACAT
LOC_Os07g02280
OsAffx.21080.1.S1_at--565--7851Chr07:742625..742649 (25 bp)
GGTATGTACATCCTCCTGTCGAACA
LOC_Os07g02280
OsAffx.21080.1.S1_at--292--2091Chr07:742647..742671 (25 bp)
ACATCTACGCGGCTGTTGGTAACTG
LOC_Os07g02280
OsAffx.21080.1.S1_at--32--1011Chr07:742746..742770 (25 bp)
AGGTCGGCCGCAAGGTCTACGAGTT
LOC_Os07g02280
OsAffx.21080.1.S1_at--524--7631Chr07:742852..742876 (25 bp)
GGGACATGTTCCACAGACCGAGCTG
LOC_Os07g02280
OsAffx.21080.1.S1_at--688--4071Chr07:742870..742894 (25 bp)
CGAGCTGGTGCTACATGATCTGGAT
LOC_Os07g02280
OsAffx.21080.1.S1_at--942--2931Chr07:742910..742934 (25 bp)
AAGGCATTGGCAGTTCACAGCGAGA
LOC_Os07g02280
OsAffx.21080.1.S1_at--335--4511Chr07:742940..742964 (25 bp)
GCCGTTGCGTTTGGGCTCATAAGCA
LOC_Os07g02280
OsAffx.21080.1.S1_at--1050--9192Chr07:743018..743042 (25 bp)
TGCCATGCCGTGCTGAAGCTGATAT
LOC_Os07g02280
OsAffx.21080.1.S1_at--131--8171Chr07:743079..743103 (25 bp)
GGAACAGGTTTCACCATTTCGTTGA
LOC_Os07g02280
Target Sequence 
GCGTGCCGGCTTCACAAGAACATGGCGTTAGGCCAGCAGATCGCCGACTATCTCGTCGCCGGTGGACTTGCCAACTCCGG
TATGTACATCCTCCTGTCGAACATCTACGCGGCTGTTGGTAACTGGGAAGAAGTTGCAAGAGTAAGGTCCATGATGAAGG
CCAGTGGCATCCAGAAGGAGCCCGGGTGCAGCGCCATCGAGGTCGGCCGCAAGGTCTACGAGTTCGTCGCCGGCGACATG
AGCCATCCTCGCACAGATGAGATATACGCCATGCTGGAGAAGATGAACGGGATTGTGAAAGAGCAGGGACATGTTCCACA
GACCGAGCTGGTGCTACATGATCTGGATGAGGTGACCAAGGAGAAGGCATTGGCAGTTCACAGCGAGAAGCTCGCCGTTG
CGTTTGGGCTCATAAGCACGGCGCCCGGGGAGACGATCAAGATCGTCAAGAACCTGAGGGCGTGCGCCGATTGCCATGCC
GTGCTGAAGCTGATATCGAAGATCACTGGGAGGAAGATCGTGTTCAGGGACAGGAACAGGTTTCACCATTTCGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis