Browse Element(s) Details


Os.30485.1.S1_at

Description gb:AK108787.1
DB_XREF= gi:32993996
TID=Os.30485.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.30485 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST C19760(E10891)~unknown protein (OJ1118_G09.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-B02, full insert sequence.
FL= gb:AK108787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0225011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02190OsAffx.25643.1.S1_at1/117+697018..697329hypothetical protein
LOC_Os07g02200Os.7393.1.S1_at11/117+698177..699125Plastocyanin-like domain containing protein, expressed
LOC_Os07g02210Os.5400.1.S1_at11/117+701316..703801Eukaryotic translation initiation factor 5A-1/2, putative, expressed
LOC_Os07g02230OsAffx.30397.3.S1_x_at11/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.28232.1.A1_at10/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.1.S1_x_at9/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.2.S1_at6/117+705311..716673hypothetical protein
LOC_Os07g02240OsAffx.16042.1.S1_at11/117+716901..718126transcription factor X1, putative
LOC_Os07g02250Os.30485.1.S1_at11/117+721178..724795expressed protein
LOC_Os07g02260OsAffx.8843.1.S1_at11/117+724976..725668expressed protein
LOC_Os07g02270OsAffx.16043.1.S1_at11/117+734314..737018hypothetical protein
LOC_Os07g02280OsAffx.21080.1.S1_at11/117+741230..743134pentatricopeptide, putative, expressed
LOC_Os07g02290OsAffx.16045.1.S1_at11/117+747870..751388F-box domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30485.1.S1_at--800--8811Chr07:721737..721761 (25 bp)
TGTTGACTTCTTGTGGGATGCCCAA
LOC_Os07g02250
Os.30485.1.S1_at--1029--6671Chr07:721675..721699 (25 bp)
GTTGCTGCCATATTTGTTGCATCCG
LOC_Os07g02250
Os.30485.1.S1_at--32--4991Chr07:721657..721681 (25 bp)
GCATCCGGTGCAGTTGGGTCATTGA
LOC_Os07g02250
Os.30485.1.S1_at--738--2812Chr08:21857983..21858002 (20 bp)
AAGATATGAACCTTTTGGCCCAGCT
NONE
Os.30485.1.S1_at--322--1171Chr07:721494..721518 (25 bp)
AGCTAGCCGGACTGGGTTGACAAAA
LOC_Os07g02250
Os.30485.1.S1_at--1160--2453Chr01:7182967..7183018 (25 bp)
AACAACATTATCACGCTAGCCAGAC
NONE
Os.30485.1.S1_at--510--1691Chr07:721454..721478 (25 bp)
AGCCAGACCGGCGTGATAGCGTTAT
LOC_Os07g02250
Os.30485.1.S1_at--821--1631Chr07:721437..721461 (25 bp)
AGCGTTATTTGGTCAAGCCGGTCTA
LOC_Os07g02250
Os.30485.1.S1_at--368--7377Chr11:24654381..24654400 (20 bp)
GTGACAGCGTTATTTGGCCACGCCA
NONE
Os.30485.1.S1_at--35--7051Chr07:721221..721245 (25 bp)
GTAAACTATTGCTGTCCTGTCTTCG
LOC_Os07g02250
Os.30485.1.S1_at--666--5251Chr07:721192..721216 (25 bp)
GAATCTGCACATGTACTCCTGTTAT
LOC_Os07g02250
Target Sequence 
TGTTGACTTCTTGTGGGATGCCCAAAGGGGAATTTCGAGATAAGCTAATGTGGGGCTGTAATGTTGCTGCCATATTTGTT
GCATCCGGTGCAGTTGGGTCATTGATTGCTAAAATTAAAATAGATGGGAGTGTGTAAGCATGCCGAGTTTGGTGGAAGAC
GGTTTTTTTTAAACGTTTTCAATTTTTAATTTTAAAAATAAATCCTTTCAAAACTTAATTTCAAGATATGAACCTTTTGG
CCCAGCTAGCCGGACTGGGTTGACAAAACAACATTATCACGCTAGCCAGACCGGCGTGATAGCGTTATTTGGTCAAGCCG
GTCTAGCTGGCGTGACAGCGTTATTTGGCCACGCCAGGATAAAACTCAGTATTGTTTTGGCCAAAAGGTTTAGATTCGAG
AAATAAGTTTTAGAAAGGGGTTATTTTTAAAATTAAAAAATAAAAAAGTTCAAAAAAAATAAAAAAAATCTTTGGTGGAA
ATGCTTCTGTGCGTTATGTAAGCACACTAAACTATTGTAAACTATTGCTGTCCTGTCTTCGGCTGGAATCTGCACATGTA
CTCCTGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis