Browse Element(s) Details


Os.31355.2.S1_x_at

Description gb:NM_190030.1
DB_XREF= gi:34907143
GEN=P0506E04.23
TID=Os.31355.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31355 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative potassium transport protein (P0506E04.23), mRNA.
PROD=putative potassium transport protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7066011/11potassium uptake protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70600OsAffx.23990.1.S1_at11/111+41203986..41208030eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70600OsAffx.23990.2.S1_x_at2/111+41203986..41208030eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70610OsAffx.23990.2.S1_at11/111+41208631..41208948hypothetical protein
LOC_Os01g70610OsAffx.23990.2.S1_x_at11/111+41208631..41208948hypothetical protein
LOC_Os01g70620OsAffx.23991.1.S1_at11/111+41210028..41210252hypothetical protein
LOC_Os01g70630OsAffx.30397.1.S1_x_at9/111+41211415..41218072hypothetical protein
LOC_Os01g70630OsAffx.30397.3.S1_x_at8/111+41211415..41218072hypothetical protein
LOC_Os01g70630OsAffx.30397.2.S1_at5/111+41211415..41218072hypothetical protein
LOC_Os01g70640OsAffx.23992.1.S1_at4/111+41224502..41225345hypothetical protein
LOC_Os01g70650OsAffx.11805.1.S1_x_at11/111+41226270..41226695Subtilisin N-terminal Region family protein
LOC_Os01g70650OsAffx.11805.1.S1_at11/111+41226270..41226695Subtilisin N-terminal Region family protein
LOC_Os01g70660Os.31355.2.S1_x_at11/111+41229343..41234287potassium uptake protein, expressed
LOC_Os01g70670Os.18167.1.A1_at10/111+41242189..41247610BTB/POZ domain containing protein, expressed
LOC_Os01g70680Os.32389.2.S1_at11/111+41248727..41249320Gamma-thionins family protein, expressed
LOC_Os01g70690OsAffx.8287.1.S1_x_at1/111+41250567..41250902Rapid ALkalinization Factor family protein
LOC_Os01g70700OsAffx.28769.1.S1_s_at11/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.28769.3.S1_at7/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.2336.1.S1_at2/111+41253053..41256206hypothetical protein
LOC_Os01g70710NANA1+41257342..41259258heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0016020cellular_componentmembrane
GO:0009674molecular_functionpotassium:sodium symporter activity
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31355.2.S1_x_at--1119--6051Chr01:41229945..41229969 (25 bp)
GAGTTCGCCGGCATCGTGTCCCGGA
LOC_Os01g70660
Os.31355.2.S1_x_at--909--4251Chr01:41229908..41229932 (25 bp)
CCGGGATGTGCCTCTTCTGCACCGA
LOC_Os01g70660
Os.31355.2.S1_x_at--1098--9471Chr01:41229893..41229917 (25 bp)
TCTGCACCGACCTCATGGACGGCGT
LOC_Os01g70660
Os.31355.2.S1_x_at--210--9171Chr01:41229815..41229839 (25 bp)
TCCTGTTCGTCACGTTCCGGACGCT
LOC_Os01g70660
Os.31355.2.S1_x_at--176--4651Chr01:41229728..41229752 (25 bp)
GCGTGTACCGGTGCATCGCCCAGTA
LOC_Os01g70660
Os.31355.2.S1_x_at--198--4971Chr01:41229716..41229740 (25 bp)
GCATCGCCCAGTACGGGTACATGGA
LOC_Os01g70660
Os.31355.2.S1_x_at--455--1951Chr01:41229509..41229533 (25 bp)
ACTGGCCGAAGCGATTCGTCATCAA
LOC_Os01g70660
Os.31355.2.S1_x_at--1069--7111Chr01:41229492..41229516 (25 bp)
GTCATCAACGAGCTCTACAGGTTCT
LOC_Os01g70660
Os.31355.2.S1_x_at--304--5911Chr01:41229483..41229507 (25 bp)
GAGCTCTACAGGTTCTTGCAGAAGA
LOC_Os01g70660
Os.31355.2.S1_x_at--857--5011Chr01:41229466..41229490 (25 bp)
GCAGAAGAACTTTAGGTCCAACGTC
LOC_Os01g70660
Os.31355.2.S1_x_at--794--5451Chr01:41229460..41229484 (25 bp)
GAACTTTAGGTCCAACGTCTCCACG
LOC_Os01g70660
Target Sequence 
GAGTTCGCCGGCATCGTGTCCCGGAGCGCCCGCGTCCCCGGGATGTGCCTCTTCTGCACCGACCTCATGGACGGCGTCCC
GCCCATCGTCCGCCACTACGCCGCCAACACGGGCTCCCTCCGCGAGCTCCTCCTGTTCGTCACGTTCCGGACGCTGCCGG
TGAGGACGGTGCTCGCCGGCGAGCGGTTCCTCGTGGCGAGGGAGGGGGCGCGCGCCGGCGTGTACCGGTGCATCGCCCAG
TACGGGTACATGGACGAGCAGGACATGGTTGGGGACGACTTCGTCCGCGCTGCCGTCGCCGCGCTGGTCGAGGTGGCGGC
GGCGGCGGCGGAGGCCGACTCCGGCGAGGAGGAGGCGGAGATGATCGGGCGGGCTCCGGCGAGCGGCGTCAGCTACGTGA
TCGGGAGGACGGTGCTGAGGATGCGGAGGGCGCGCAACTGGCCGAAGCGATTCGTCATCAACGAGCTCTACAGGTTCTTG
CAGAAGAACTTTAGGTCCAACGTCTCCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31355.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis