Browse Element(s) Details


Os.18167.1.A1_at

Description gb:AK072340.1
DB_XREF= gi:32982363
TID=Os.18167.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.18167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048I08, full insert sequence.
FL= gb:AK072340.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7067010/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70630OsAffx.30397.1.S1_x_at9/111+41211415..41218072hypothetical protein
LOC_Os01g70630OsAffx.30397.3.S1_x_at8/111+41211415..41218072hypothetical protein
LOC_Os01g70630OsAffx.30397.2.S1_at5/111+41211415..41218072hypothetical protein
LOC_Os01g70640OsAffx.23992.1.S1_at4/111+41224502..41225345hypothetical protein
LOC_Os01g70650OsAffx.11805.1.S1_x_at11/111+41226270..41226695Subtilisin N-terminal Region family protein
LOC_Os01g70650OsAffx.11805.1.S1_at11/111+41226270..41226695Subtilisin N-terminal Region family protein
LOC_Os01g70660Os.31355.2.S1_x_at11/111+41229343..41234287potassium uptake protein, expressed
LOC_Os01g70670Os.18167.1.A1_at10/111+41242189..41247610BTB/POZ domain containing protein, expressed
LOC_Os01g70680Os.32389.2.S1_at11/111+41248727..41249320Gamma-thionins family protein, expressed
LOC_Os01g70690OsAffx.8287.1.S1_x_at1/111+41250567..41250902Rapid ALkalinization Factor family protein
LOC_Os01g70700OsAffx.28769.1.S1_s_at11/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.28769.3.S1_at7/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.2336.1.S1_at2/111+41253053..41256206hypothetical protein
LOC_Os01g70710NANA1+41257342..41259258heavy metal-associated domain containing protein, expressed
LOC_Os01g70720Os.38191.2.S1_at11/111+41265313..41267845expressed protein
LOC_Os01g70720Os.10402.1.S1_x_at11/111+41265313..41267845expressed protein
LOC_Os01g70730Os.28450.1.S1_at10/111+41269394..41269818flowering promoting factor-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18167.1.A1_at--1063--2431NONE
AAAAGGTCACTGCTCGGTATCAGCT
NONE
Os.18167.1.A1_at--205--7871Chr01:41246980..41247096 (25 bp)
GGTATCAGCTTATCTGTCCATCGAA
LOC_Os01g70670
Os.18167.1.A1_at--78--5111Chr01:41247174..41247198 (25 bp)
GCACTGCCATATTGTTCGACGAACT
LOC_Os01g70670
Os.18167.1.A1_at--1054--5471Chr01:41247194..41247218 (25 bp)
GAACTTGGCGATCTTCTCCAGGGTG
LOC_Os01g70670
Os.18167.1.A1_at--84--7731Chr01:41247214..41247238 (25 bp)
GGGTGGATCCCTGAGAATTGCTGCA
LOC_Os01g70670
Os.18167.1.A1_at--28--3851Chr01:41247234..41247258 (25 bp)
CTGCAGTAGTCCAGCTTGTCTAAGC
LOC_Os01g70670
Os.18167.1.A1_at--766--4391Chr01:41247257..41247281 (25 bp)
GCCAAATTGCCCTTGTATATCTAGA
LOC_Os01g70670
Os.18167.1.A1_at--824--6851Chr01:41247379..41247403 (25 bp)
GTATTTATTCCCAAACGTGACGCCG
LOC_Os01g70670
Os.18167.1.A1_at--1059--7371Chr01:41247395..41247419 (25 bp)
GTGACGCCGTCATGCTTGTGTGTGT
LOC_Os01g70670
Os.18167.1.A1_at--492--9991Chr01:41247436..41247460 (25 bp)
TAGCCAAGTCATGCATTCGATATCA
LOC_Os01g70670
Os.18167.1.A1_at--928--4791Chr01:41247513..41247537 (25 bp)
GCTCCCGCTACATTATATGTGTTGT
LOC_Os01g70670
Target Sequence 
AAAAGGTCACTGCTCGGTATCAGCTTATCTGTCCATCGAAGAGAGAGGTCATGATTTTCGGAAGCCTAAAGCAGGCTGGC
ACACTCCTACCCAAAGCTCCAAAAGGGTGGGGTTGGCGCACTGCCATATTGTTCGACGAACTTGGCGATCTTCTCCAGGG
TGGATCCCTGAGAATTGCTGCAGTAGTCCAGCTTGTCTAAGCCAAATTGCCCTTGTATATCTAGAAACAATAGTAGTGTT
AGCTTATTGCAAATGGAAAAAAGAAGGCACTAAATGGCACTTGCAAAGTATGGTAATGTCACTGTAATGCAATGGTTCTA
TTGTATTTATTCCCAAACGTGACGCCGTCATGCTTGTGTGTGTAATAGGAACTAATATATAGCCAAGTCATGCATTCGAT
ATCATAGGACCCTAGNTGGGTTCTTGTGGTTAGNNTTTTTTTTTAATTATTTTTTTANGCTCCCGCTACATTATATGTGT
TGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18167.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis